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The integrated microbial genomes system: an expanding comparative analysis resource
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Expanding the Limits of Thermoacidophily in the Archaeon Sulfolobus solfataricus by Adaptive Evolution
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Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes
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Institutional User Agreements
… for the appropriate contact name, email address and phone number for the signing official. User Institutions with an active JGI User Agreement older than January 2024 will be required to execute a 2024 version .  The recent … ACADEMIC, NON-PROFIT or COMMERCIAL PROPOSALS with MULTIPLE COLLABORATORS: The submitting researcher’s home institution …
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Synthesis
… to convert sequence into functional assessments. This is done by synthesizing genes, pathways, and whole chromosomes … DNA constructs:  Individually arrayed constructs, up to ~150 Kb in length  Pooled libraries such as sgRNA, promoter or …
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Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes
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Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery
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Plasmid Copy Number Engineering Accelerates Fungal Polyketide Discovery upon Unnatural Polyketide Biosynthesis
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Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria
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Benjamin Cole
… microbes can colonize plant roots, focusing on genetic components required for effective colonization. In addition, Dr. Cole is focusing on how individual plant cells respond to their biotic environment using emerging single-cell characterization technologies (scRNA-seq, Spatial …
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Scaling Up Existing Skill Sets
… before. Seeing the breadth of interesting work being done at the JGI has really motivated me to think outside of … and hopefully will be part of such a highly motivating and collaborative research environment such as JGI/LBNL. What … graduate student Mentors: Igor Grigoriev and Asaf Salamov, Fungal and Algal Program What effect has your summer …
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Ben Bowen
… & Metabolic Biology … 2024 Berkeley Lab Recognition of Excellence Award 2016 R&D 100 Winner 2014 Berkeley Lab … UC Berkeley, Leadership and Development Program Awardee 2005-2009: NIH K25 Mentored Career Development awardee … 5(3), 431–442. Yang, J., Rubel, O., Prabhat, Mahoney, M., & Bowen, B. (2015). Identifying important ions and …
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