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The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome
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Identification of beneficial and detrimental bacteria impacting sorghum responses to drought using multi-scale and multi-system microbiome comparisons
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Metagenomics-resolved genomics provides novel insights into chitin turnover, metabolic specialization, and niche partitioning in the octocoral microbiome
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Draft Metagenome Sequences of the Sphagnum (Peat Moss) Microbiome from Ambient and Warmed Environments across Europe
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Water aging and the quality of organic carbon sources drive niche partitioning of the active bathypelagic prokaryotic microbiome
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Four Researchers Join JGI User Executive Committee
… have been elected to the User Executive Committee of the Joint Genome Institute, a Department of Energy user facility … biodiversity, ecology, and evolution, with a focus on microbiome sciences and fungal symbioses. He has worked … Program over the past decade in gene regulatory network projects supported by the CSP, and as part of microbiome …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Accepted proposals emphasize JGI interests in algae and secondary metabolites. A total of 27 … through the  CSP New Investigator call . It is the first project to have successfully evolved into a full-scale … metabolite-producing environmental bacteria from the Tiny Earth collection. The work builds upon a pilot project to …
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User Programs
… For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for … CLOSED Who Should Apply? Investigators with research projects that integrate the expertise and capabilities of … and metabolomics capabilities Investigators who have not been a PI on any approved proposal with the JGI …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… and their JGI mentors are listed below, along with their project focus areas: Undergraduate Interns Andrew Lin and … Genetic Elements and CRISPR Spacers in the Conifer Needle Microbiome Carlos Vazquez and mentor Bryce Foster, … Ecology & Evolution of Self-Catalytic Introns across Earth’s Microbiomes Sonia Vargas and mentors Tomas Tyml and …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal … data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact … the fungal Tree of Life, including the 1000 Fungal Genomes Project, which aims to provide a reference genome for each …
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Natural soil microbiome variation affects spring foliar phenology with consequences for plant productivity and climate‐driven range shifts
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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have … For the past few years they have partnered with JGI’s Microbiome Data Science group led by Nikos Kyrpides , mining … a fellow Berkeley professor from the De­partments of Earth and Planetary Science and Environmental Science, …
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