The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
Results
Elucidating Bacterial Gene Functions in the Plant Microbiome
Exploring microbial functional biodiversity at the protein family level—From metagenomic sequence reads to annotated protein clusters
PSimScan: Algorithm and Utility for Fast Protein Similarity Search
DOE JGI Metagenome Workflow
Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
Carotenoid–protein interaction alters the S1 energy of hydroxyechinenone in the Orange Carotenoid Protein
The CC–NB–LRR protein BSR1 from Brachypodium confers resistance to Barley stripe mosaic virus in gramineous plants by recognising TGB1 movement protein
A multi-omic survey of black cottonwood tissues highlights coordinated transcriptomic and metabolomic mechanisms for plant adaptation to phosphorus deficiency
The Orange Carotenoid Protein: a blue-green light photoactive protein
The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions
Plant–microbiome interactions: from community assembly to plant health
