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Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113T)
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16S rRNA Gene Amplicon Sequencing Data from Flooded Rice Paddy Mesocosms Treated with Different Silicon-Rich Soil Amendments
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Transcriptomic Data Sets for Zymomonas mobilis 2032 during Fermentation of Ammonia Fiber Expansion (AFEX)-Pretreated Corn Stover and Switchgrass Hydrolysates
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… that can’t be cultured by analyzing and then extrapolating data obtained from environmental samples — to identify over … and … that was really the foundation for many of the tools that are available these days and that are widely used … actually tested in the 2011 paper. In 2015, the study’s dataset became material for a hands-on undergraduate …
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MGM Workshop at Fisabio Summer School 2025
… fields who are interested in learning and sharing concepts, tools and research results in genomics, metagenomics and the …
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Massie S. Ballon
… as help cultivate the next generation of genomic research users, partners, and collaborators.  Ms. Ballon is a … to see the coverage of JGI-enabled science highlighting user research, newly accepted proposals, and outreach … JGI’s strategic vision, the Institute’s staff and user community. …
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Novel Features of the Polysaccharide-Digesting Gliding Bacterium Flavobacterium johnsoniae as Revealed by Genome Sequence Analysis▿ †
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Ancient Algae Reveal Secrets of Plant Evolution
… them to adapt to life on land. Learning that these genetic tools existed in close algal relatives  to terrestrial … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … discovered that ancient algae already possessed genetic tools to cope with environmental stresses such as drought …
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Open Frameworks Training the Next Generation of Scientists
… DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, and the DOE Systems Biology Knowledgebase … and skill development while curating reusable microbiome data. Undergraduate educators are partnering with the JGI … in parallel. While KBase does not currently have all the tools for complete processing and analysis of fungal data, …
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Trent Northen
… to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using … Populus across genotypes and environments. 2024 Nature Sci Data. 11, 339. https://doi.org/10.1038/s41597-024-03069-7  … 4;118(18). https://doi.org/10.1073/pnas.2019855118 McGivern BB et al. Decrypting bacterial polyphenol metabolism in an …
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MGM Workshop at Fisabio Summer School
… fields who are interested in learning and sharing concepts, tools and research results in genomics, metagenomics and the …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC Berkeley and … Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by the U.S. Department of Energy (DOE) Joint … report the identification of active Cas enzymes – dubbed Cas14 – that target ssDNA. In contrast, the seminal …
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