Search

… the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly available metagenome data … datasets from a variety of environments, as well as tools for analysis. “There is evidence that methanogenesis …

… flows, and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC … hardware and worked closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was … Data Collaborative where she leads infrastructure and user-centered design efforts. … PhD Applied Mathematics …

Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …

… ecosystem,” said Salamov, one of Wint’s mentors and a data scientist at the JGI. Previous studies were conducted … predictor of gene expression levels using machine learning tools. “This was very exciting to see how Rhondene not only … the research question and applied it to such a large data set, but also went all the way through to convert her …

… and position JGI as a leading integrative genome science user facility. In addition to serving as JGI Director, Dr. … is also on the Leadership Team of the National Microbiome Data Collaborative and served as President of the Society … of solvent-producing Clostridium species. Scientific Data. 11 Hahnke, R. L. et al. 2022. Expanding the Genomic …

… of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, has unveiled these motility tools in hot spring  Chloroflexota .  Ocean-dwelling  … (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the …

Community Science Program , allows us to work and share our tools with a widening circle of researchers whose work …

By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …

… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, hosted three undergraduates and seven … months, the students participated in networking workshops, data carpentry hackathons, and also made new friends while … ” Anna Kucherova : “I got to learn about skills and tools that I’d never done before from my mentors. Also, …

Joint Genome Institute (JGI) , a DOE Office of Science User Facility. She took special interest in it because she … through over 55 billion genes and 16 trillion DNA bases of data, to figure out what to study and compare for the … tests for raw data and how to use some bioinformatics tools for analysis to help them focus on what to pull out …

… scaling up genomics analysis to peta-bases, and enabling data-driven science. This is a group of computational … scientists, the Wang group has developed customized data analyses and software to enable “grand-scale” … example, this group was responsible for the terabase scale data analysis in the cow rumen and sheep rumen metagenome …

… of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, … used 1,870 known virus-host pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the iPHoP program generated many new …