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Metatranscriptomes of California grassland soil microbial communities in response to rewetting.
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Microbiome composition modulates secondary metabolism in a multispecies bacterial community
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A metagenome-level analysis of a microbial community fermenting ultra-filtered milk permeate
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a … to inform the engineering of stable, synthetic microbial communities to take advantage of their joint metabolisms. … bacterial strains as part of the Community Science Program (CSP)  Functional Genomics proposal call. …
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Genomic Characterization of Candidate Division LCP-89 Reveals an Atypical Cell Wall Structure, Microcompartment Production, and Dual Respiratory and Fermentative Capacities.
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
As SIP experiments shed more light on microbial communities than ever before — especially with the prospect … of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR … windows into specific activities catalyzed by microbial communities. By pairing RNA or DNA sequencing with tracings …
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Protocols
Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA preparation.  JGI sample QC protocols can be found here . DNA Extraction …
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Leadership
… the direction of programs and initiatives to enhance the JGI’s preeminence as a national resource. Members report to the JGI Director. …
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Doubling Down on Known Protein Families
… falls within that single beam. When it comes to microbial communities, scientists have historically been unable to see … through a novel approach to better understand microbial communities by looking at protein function within them. The … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Supercharging SIP in the Fungal Hyphosphere
… aspects of a commonly-used process for studying microbial communities, with results published in the  November 2022 … microorganisms. Because microorganisms live in complex communities, like within soils or the gut, they are … HT-SIP is a capability available to request through  the JGI proposal calls . … Work at Lawrence Livermore National …
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When “The Blob” Made It Hotter Under the Water
… may foreshadow climate change impact on marine microbial communities. The Science A team of researchers tracked the … event was recorded during a long-term study of microbial communities in the northeastern subarctic Pacific Ocean. The … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Diurnal cycling of rhizosphere bacterial communities is associated with shifts in carbon metabolism
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