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How Filamentous Fungi Sense Food
… model fungus  Neurospora crassa . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct and model gene regulatory pathways used by the … present in plant biomass. This is of interest for bioenergy researchers looking to improve the industrial production of …
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How Maize Makes An Antibiotic Cocktail
… a family of compounds that protects it against infections — using surprisingly few enzymes. The Science Maize ( … entailing the function of more than a dozen enzymes. But researchers have now revealed that just a handful of enzymes … giving scientists a bigger bang for their buck. The research team reports that transferring just four genes …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct … from the warm, well-lit surface, to the blue-lit twilight zone, to the continuous pressure of the dark abyss, 4000 m … lead author Dominique Boeuf and colleagues set sail on research cruises in 2015 and 2016. At Station ALOHA , site …
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Gut Fungi: Unexpected Source of Novel Chemicals
… and help them digest their last leafy meal. In their evolutionary history, these fungi branched off early from aerobic … at Pacific Northwest National Laboratory. The team’s research at both the JGI and EMSL was enabled by the … for User Science (FICUS) initiative, which allows researchers to more easily integrate the expertise and …
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have … bean’s close relative, as a biofuel. To this end, a team of researchers led by Jeremy Schmutz of the JGI and the … time-consuming and involved a lot of different players and researchers across many different labs to be able to …
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DAP-seq Drives Robust Mapping of Gene Regulation
… assays yield an unprecedented view of plant evolution and adaptation.    Understanding how genes are regulated … As  published online in  Nature Plants  on July 15, researchers have developed multiplexed assays — experimental … by these approaches creates a vast resource offering researchers the ability to chart regulatory networks across …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus protein tied to carbon cycling.  The Science Through a collaborative effort, researchers have identified a protein in soil viruses that … of Energy (DOE) Office of Biological and Environmental Research (BER) and is a contribution of the Scientific Focus …
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Better Genome Editing for Bioenergy
… technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput … To ensure the gene editing tool will make the right cut, researchers created a set of guide RNAs that were effective … study,  published in  Metabolic Engineering , a team of researchers likewise honed their tool before felling their …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data contextualization The Science Since its launch 25 years ago, … entities,  further outlined in the journal  Nucleic Acids Research in November 2022.  One of GOLD’s strengths has been …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… hitchhikers. These organisms are abundant and yet exceptionally small, with mini genomes to match. As a result, they … provides new views of these relationships.  Recently , researchers used population genomics to find that while … more about how archaeal hosts and hitchhikers coexist, researchers studied the host  Ca . Altiarchaeum and its …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and … or C-fern, specifically has been studied in plant research laboratories and plant biology courses across the … explain the massive size of most fern genomes. A team of researchers put together a chromosomal genome assembly and …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… On September 1, JGI held a JGI Engagement: Pro Tips for … Science Program (CSP) Applications Webinar inviting researchers to submit white papers to the CSP  New … is a free, open source analytics platform provided to the research community by DOE. Email [email protected] if you have …
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