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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora … More importantly, when faced with a veritable buffet of carbon sources, these fungi detect which complex chains are … the gene regulatory networks as they responded to available carbon sources, which ranged from simple sugars to plant …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data contextualization The Science Since its launch 25 years ago, the  Genomes OnLine Database … scheme to better define the genomic information and ecosystems. These curated data are accessible on JGI data …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from metagenomes. The … ecosystem functions in processes ranging from nutrient cycling to plant health and growth. Developing a scalable … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth … Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant … how the molecules in tiny microbes can impact whole ecosystems. Part of the reason he’s asking this question is …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … fact, a microscopic water mold, genetically related to such aquatic species as diatoms and kelp. Dubbed Phytopthora … al. Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis . Science. 2006 Sep …
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Rex Malmstrom
… and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth rates and carbon consumption of SAR11 bacteria, the most abundant … Ph.D. in Marine Biology/Biochemistry, University of Delaware BA in …
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Forest Fungi, Seagrass, and a New View of Symbiosis
… research, connected to nutrient cycles. Francis Martin and Lucas Auer discuss their work on communities of forest floor fungi. Allison Joy looks into seagrass meadows' carbon sequestration with insights from Adam Healey and Xiao …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a close look at more ecosystems and organisms than ever before. In 2006, the JGI … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal … production. They are thought to use billions of tons of the carbon dioxide trapped in biomass each year to do so. As … considered to have a substantial influence on the global carbon cycle. All methanogenic archaea use one of three …
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JGI Announces 2025 New Investigator Portfolio
… Ian Gilman, Louis Graf, Yuxi Guo, Shaomei He, Vayu Hill- Maini, Forrest Lefler, Pok Man (Bob) Leung and Huang Li; … and Mar Schmidt; [bottom] Cody Spiegel, James Tan, Emma Timmins-Schiffman, Andressa M. Venturini, Valentin Waschulin, … to explore microbial and plant interactions across unique ecosystems, from alpine soils to tropical glaciers.  …
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Eelgrass Proves to Be Much Younger Than We Thought
… The Science Eelgrass, one of the most abundant plants in the ocean, originated in Japan before spreading around … years. The Impact Eelgrass represents one of the largest carbon sinks in the ocean — occupying just 0.2% of the ocean … these meadows are responsible for almost one-third of carbon sequestered in the ocean. In addition to providing a …
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JGI@25: Solving the Mystery of the Missing Oil
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … developing models for cellular properties, communities and ecosystems.” Building off multiple collaborations, Lab …
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