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JGI@25: The Little Alga That Could
… evolutionary history. Retaining ancestral features of both plant and animal cells, it shares nearly 7,000 genes with other organisms (a third of those shared by both humans and flowering plants). Its genome also … impact. Her lab has sequenced four additional green algal genomes using Chlamy as a reference for functional …
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JGI & KBase at PAG XXVII
The Plant and Animal Genome XXVII Conference (PAG) takes place … Biology Knowledgebase (KBase) will be at Booth 509. Stop by and chat with representatives from KBase and the JGI … Science Program, and how you can use the KBase system to accelerate your plant genomics research. Click here to …
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The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown‐rot mechanism involving Fenton chemistry
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Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
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High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant
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Refinement of the “Candidatus Accumulibacter” genus based on metagenomic analysis of biological nutrient removal (BNR) pilot-scale plants operated with reduced aeration
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Scaling Up Existing Skill Sets
… internship opportunities in fields ranging from plant-microbe interactions to functional genomics. Hear from … to pursue a STEM career, particularly one that incorporates big data. A large part of my project this summer was … of code working and get the desired final output. Being successful in my computational efforts assured me that I had …
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FICUS-NERSC/KBASE
Research Scientific Computing Center ( NERSC ) is to accelerate scientific discovery at the DOE Office of Science … the DOE JGI, NERSC and KBase issued a call for proposals in biological data science as part of the FICUS … next review cycle. All proposals undergo technical review by JGI staff as well as staff at the other participating …
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Nigel Mouncey
… chemicals, cosmetics and new crop traits. Dr. Mouncey has successfully built integrated and highly effective … Encyclopedia of Actinobacteria with 824 Isolate Reference Genomes. Cell Genomics 2: 100213Nayfach S et al. 2021. A … Biotechnol. 39:499-509 Hurley A et al. 2021. Tiny Earth: A Big Idea for STEM Education and Antibiotic Discovery. mBio. …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … nutrients from decaying organic matter (saprobes), and many plant pathogens known to infect most major food crops and … National Laboratory (Berkeley Lab), has generated a more accurate phylogenetic tree tracking the evolution of  …
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A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome
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A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome
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