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Secrets of the Needles: What Microbes do on Conifer Leaves
… The Science In a recent Microbiome paper , scientists focused on the conifer needle microbiome. The phyllosphere, … pine, Douglas fir and Engelmann spruce–to learn more about conifer needle microbiomes. The survey showed what … summer project in the JGI-UC Merced Internship Program. In 2023, Shayna Bennett, a UC Merced graduate student in …
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Virus Discoveries that Keep Getting Bigger
… work — have quickly accelerated understanding of giant viruses. The Science In the last thirty years, in environments … One way of detecting giant viruses in sequence data is read-mapping: using giant virus reference genomes to search for … simultaneously, these genomic studies provide information about virus hosts. As a result, the outcomes of these …
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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … ecosystems around the world, conducting iterative searches using statistical analyses to continuously refine and … and Management.” So begins a passage from Doudna’s book about her meeting with Banfield. (Banfield’s recounting of …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… Through the  “Facilities Integrating Collaborations for User Science” (FICUS) call between the JGI and the  … Biology .  Watch this webinar hosted by EMSL to learn more about BioSANS. Letters of Intent are due March 17, 2021 for … also welcome to apply to the FICUS program. Find out more about the FICUS program at:  jgi.doe.gov/user-programs . Q:  …
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Decoding Yellowstone’s Microbial Mats
… adopted new technologies, and made a few discoveries about the microbial mat denizens.  …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Science In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the … Summary As the planet has changed, so have plants. Curious about their ability to adapt to changing environments, … and in flowering plant lineages.   With the information about  Marchantia -specific innovations and adaptations, …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… from plants, microorganisms, and environmental samples using targeted and untargeted approaches. The webinar … with metabolomics analysis.  Q: Can you give us an idea about the scale of an average study? How many samples are … the metabolomics data (secondary metabolomics), how can we map it into these networks? A: We use networks based on the …
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Training the Next Generation of Talent
… Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back on campus at the University of California, Merced to start … of their internships, and are summarizing their data in a report. “QSB is grateful to the JGI-UC Merced Summer …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… CSP  New Investigator call for proposals.  Tips: Contact us with your questions ([email protected]) … your proposal idea with JGI staff to clarify key points about JGI’s capabilities, technical feasibility, and … by DOE. Email engage@kbase.us if you have questions about how KBase can support your CSP data. The proposal call …
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Changes to virus taxonomy and the ICTV Statutes ratified by the International Committee on Taxonomy of Viruses (2024)
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Calculating the Costs of Multiple Switchgrass Gene Copies
… team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology … When viewing the full distribution of switchgrass on a map, these 8X individuals occurred in parts of the … to address long-standing evolutionary ecological hypotheses about how C4 perennial grasses like switchgrass respond to …
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Extracting the Secrets of Secondary Metabolites
… combo helps further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, those … and other industries — yet there’s still so much about them we don’t know.  Unlocking the power of secondary … cluster. That work by JGI researchers was published April 2022 in Cell Chemical Biology . When it comes to insect …
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