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In silico analysis of the expression profile of AA9 Lytic Polysaccharide Monooxygenases (LPMOs) and the CDH Cellobiose Dehydrogenase enzyme in wood-degrader Agaricomycetes. The Pleurotus ostreatus case
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VEGA Symposium
… will take place November 18-19, 2026 on the UC Berkeley campus. Organized every two years since 2018, the goal of this … together a “Viral Ecogenomics” community to foster discussion on how to best capture and characterize uncultivated viral diversity, understand the role of viruses in natural ecosystems, and functionally explore viral …
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Leo Baumgart
… binding sites and which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and plants. … cells across diverse plant tissues. Dr. Baumgart focuses on expanding functional genomics capabilities through … Lax, Carlos, Stephen J. Mondo, José F. Martínez, Anna Muszewska, Leo A. Baumgart, José A. Pérez-Ruiz, Pablo …
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Refinement of the “Candidatus Accumulibacter” genus based on metagenomic analysis of biological nutrient removal (BNR) pilot-scale plants operated with reduced aeration
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Len Pennacchio
… Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to … at Stanford University where he uncovered the genetic cause of a rare form of human epilepsy and subsequently generated one of the first mouse models for this common neurological disorder. In 1999, …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… National Laboratory when applying to the FY2024 EMSL-JGI FICUS collaborative proposal call . Letters of Intent for the joint call are due March 7, 2024. The FICUS call allows researchers to combine the power of genomics … Pennacchio , Project Management Office. For questions about the appropriateness of projects or experimental …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… carbon and cycle key nutrients like nitrogen and phosphorus.  This way, the fungi of forest soils hold keys to tree … give researchers a way to access much more information about fungi in these environments. “Now with these new tools … shared their tasks, Martin and his team opted to profile RNA, for a view of fungal gene expression. They …
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Cultivating Symbiotic Antarctic Microbes
… and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial … ecological consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental … researchers have been able to gain further insights about how microbes have adapted to thrive in polar …
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DAP-seq Drives Robust Mapping of Gene Regulation
… deciphering the complex wiring behind a city’s power grid. Just as the flow of electricity controls when and where … from grasses to broccoli and trees like poplar, spanning about 150 million years of evolution,” said Leo Baumgart, … four different species in there all at once. That let us profile more cells for the same cost, and it actually made …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… (thermophilic) microbes are of interest for their potential use in number of biotechnological applications. Molecular … into the evolution of life on Earth. For decades, longtime JGI collaborator Bill Inskeep of Montana State University … microbial field studies at Yellowstone, and in this latest report, published in Nature Microbiology , he and his team …
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