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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… Studying the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the majority of the cell’s genome is missing from the final assembly. So while researchers are confident all the …
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Fishing for Novel Cellulose Degraders
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and unknown. The challenge remains to learn more about what microbes are present in any given … of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported under Contract No. …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… have influenced their careers in science. Hear more about what they learned from working with their JGI mentors, … Foster Irina Birskis Barros and mentors Elle Barnes and Susannah Tringe Shari Larsen and mentor Robert M. Bowers … research poster. And I was able to present at the, um, final symposium at UC Merced  Daravuth Cheam: The biggest …
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“A STEM career is in reach and accessible”
… Notes from the Summer 2018 Biotech Partners Interns from Antioch High School. … higher education and access to fulfilling science careers, JGI hosted five students from Antioch High School this …
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When “The Blob” Made It Hotter Under the Water
… began in late 2013, when a large patch of warm ocean water about a third the size of the United States began forming in … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Computationally Classifying Fungal Lifestyles
… Dothideomycetes includes fungi that obtain nutrients from decaying organic matter (saprobes), and many plant pathogens … and feedstocks for biomass and biofuel production. Learning about the ecology and evolution of  Dothideomycetes could … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and applying a … is central to our ability to offer host-engineering for our users,” says JGI Director Nigel Mouncey. Using CRAGE, JGI … for investigating plant-microbe interactions. A final recent advance in CRAGE is the addition of CRISPR …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a link in … remained largely untouched until seven years later. In 2018, as members of the ZyGoLife consortium , my colleagues and I decided to re-visit the Olpidium genome data . Taking the …
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Rex Malmstrom
… of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … the ocean. Later during his postdoctoral work at the Massachusetts Institute of Technology he developed a high … cell sorting and non-standard molecular protocols.  Finally, his team utilizes new technologies, e.g. acoustic …
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Help from Citrus’ Bitter, Hardier Cousin
… disease-resistance that could prove fruitful for saving Citrus from greening disease. You’ve probably never heard of … orange ripens only bitter, intensely sour fruit. Yet this plant, native to China and now disseminated around the … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Building Sphagnum Genomic Resources
… resources to build up Sphagnum as a plant model system focused on carbon cycling studies, rather than for food or fuel … other single plant genus. Peatlands accumulate partially decomposed matter, and researchers estimate that they hold about 25 percent of the world’s soil carbon. In high …
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Biodesign
… The team has three subgroups: Synthetic Biology Lab : a user science group dedicated to user project design, assembly, and quality control Strain … assembly and analysis Overview of biodesign products The JGI Biodesign platform enables users to validate hypotheses …
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