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Ben Bowen
… Lab Director’s Award for Exceptional Achievement 2012 UC Berkeley, Leadership and Development Program Awardee … of cancer cells define their sensitivity to HAMLET-induced death; c-Myc and glycolysis. Oncogene, 30(48), … Education …
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Waiting to Respire
… years ago, cyanobacteria acquired the ability to produce their own food and generate oxygen as a byproduct. The … of UC Berkeley geomicrobiologist Jill Banfield, a longtime JGI collaborator, postdoctoral fellow Paula Matheus … sharing co-first authorship. Their data suggests that the shared common ancestor of all five bacterial lineages was an …
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A Complex Confection Decoded: Sugarcane Reference Genome
… by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the sugarcane cultivar R570 … The Impact In providing a reference sugarcane  genome , the JGI provides foundational genetic information that crop … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… Identifying and breeding varieties that have high productivity across a range of environments is becoming … from half of the United States. As  reported January 27, 2021 in  Nature , the team led by researchers at the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Crysten Blaby-Haas
… Dr. Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials Initiative, a partnership between JGI and the Molecular Foundry, a nanoscale research and … From 2011 – 2015, she worked with Sabeeha Merchant at UCLA as a NIH Ruth L. Kirschstein National Research Service …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … a swath of blueprints to find parts that photosynthesizers share. The end result was a list of genes, termed  The …
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Expanding Virophage Diversity
… with giant viruses. Almost all known virophage genomes share only four genes in common: major and minor capsid … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science facility, have increased the … more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) …
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive collection of … to search your interactive tree? A: Sure, if you enter ‘Mucorales’ in the search box, you will see only that part of … data in standard formats or contact us if you would like to share your data with other researchers 13.  Q: Is it …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… microbiome science from largely observational to reproducible mechanistic studies.  This conference is inspired by … (EcoFABs) designed for precise manipulation and reproducible experimentation of microbiome dynamics. Together, we will explore cutting-edge advancements in constructing, modeling, and applying these engineered ecosystems …
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Nikos Kyrpides
… bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the … Nat Microbiol . 6(7):960-970. Nayfach S, et al. (2021) CheckV assesses the quality and completeness of … Nature Biotechnol . 39(5):578-585. Nayfach S, et al. (2021) A genomic catalog of Earth’s microbiomes. Nature …
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Boosting Small Molecule Production in Super “Soup”
… strains engineered for the biochemical conversion of glucose to value-added products are limited in chemical output … to keep processes running smoothly. As  reported August 26, 2021, in  Nature Communications , researchers led by Hal … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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