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Metagenomics untangles potential adaptations of Antarctic endolithic bacteria at the fringe of habitability
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JGIota: Looking Back at Sequencing for Soybeans
The soybean is a crop that could boost biofuels and fertilize fields. So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome sequence, researchers have been able to look into soybean’s …
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How Filamentous Fungi Sense Food
… . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … (Berkeley Lab). The work was enabled in part through JGI’s Community Science Program through a proposal akin to the … use of deletion strains generated by Grant P01 GM-068087 “Functional Analysis of a Model Filamentous Fungus” and that …
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Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample
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Draft Metagenome Sequences of the Sphagnum (Peat Moss) Microbiome from Ambient and Warmed Environments across Europe
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
Facility located at Berkeley Lab. In addition to providing metagenome mining for computational analysis of the AT … the JGI provided DNA synthesis capabilities to enable functional testing of these enzymes. Yasuo Yoshikuni, head … to the way many organisms function, they have a sense of why nitrogen metabolisms can be so varied.  As evolution has …
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Critical biogeochemical functions in the subsurface are associated with bacteria from new phyla and little studied lineages
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Seven genome sequences of bacterial, environmental isolates from Pony Lake, Antarctica.
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Eight genome sequences of bacterial, environmental isolates from Canada Glacier, Antarctica
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … of rumen-digested switchgrass, researchers isolated and sequenced DNA from rumen microbes involved in the digestion …
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Streamlining Regulon Identification in Bacteria
… with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … genome science user facility, connecting genes to functions is part of the mission of the U.S. Department of … the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given sigma factor are inferred. …
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The Case for Conservation
… with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each representing a single … comes from finally having an answer to the question, “Why bother keeping this?” For Stuart McDaniel’s lab at the …
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