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JGI User Executive Committee Expands
… Six new members have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint … of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). They are: Ivan Baxter of the … environments. He’s been involved in several plant genome projects through the Community Science Program. As a UEC …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a methylthio-alkane reductase system, researchers … machinery harvests sulfur from gaseous organic sulfur compounds in the atmosphere.  Beyond bacteria, this … way from sequencing to functional characterization, and a project like this — an exciting project — we were able to …
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Zwartia hollandica gen. nov., sp. nov., Jezberella montanilacus gen. nov., sp. nov. and Sheuella amnicola gen. nov., comb. nov., representing the environmental GKS98 (betIII) cluster.
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Better Genome Editing for Bioenergy
… technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput … at a genetic level, how does  Y. lipolytica work? The project was a multi-institutional effort led by … if the gene is actually essential. Through the JGI’s  Community Science Program , the scientists thus set out to …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA … analysis of microbial, fungal, and plant research projects.  More recently, these long-reads have been applied … seen substantial improvement with hybrid assemblies when compared to long-reads-only assemblies, especially with CCS …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… from Antarctica to Africa to global oceans. Through the Community Science Program of the U.S. Department of Energy … proposals have been accepted from 70 full submissions based on 92 letters of intent. Additionally, 40 percent … Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  … 12 of Phytozome will be retired, and  version 13 will become the current, and only, version of Phytozome accessible … possible given the finite staff available to the Phytozome project. What will happen to Phytozome v12 URLs after August …
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Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO, USA.
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Finding the Fermenters
… data resources, researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in environments with … than 400 cultured rumen prokaryotes from the  Hungate1000 project . They also used the tool to predict possible …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have … and published in the journal Science . At the time, the project was co-led by Daniel Rokhsar, head of the JGI’s Computational Biology Program, along with JGI Computational … C. reinhardtii on PhycoCosm …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of biosynthetic … of Bacteria and Archaea (GEBA) initiative. “This project has helped to define the current shape of the … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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