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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately … details of life’s genetic blueprint has long been a significant challenge in genomics. Enter GenomeOcean, a powerful … generative model  now available to the global research community able to not just analyze but also create DNA …
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The JGI announces 2024 awardees for our Community Science Program annual call
… Adriana Corales, Hugh Cross, Megan DeMarche, Joanne Emerson, Matthew Hudson, Megan Keller and Julia Kelliher; [below] … to announce the fifteen scientists selected for our 2024 Community Science Program Annual Call. “It’s exciting to see … PIs have proposed research that addresses various important scientific questions relevant to the DOE’s mission, and …
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Mining Metagenomes for Cas Proteins
… to accurately edit genomes (that is, repair gene mutations, and either delete or add genes in a precise fashion) … is being used to develop drought, flooding, pest-resistant, and better-yielding crops. On the clinical side, gene … enabling new discoveries and is a continuation of previous collaboration of the JGI with the Doudna lab on the …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
… excited to announce the 18 scientists selected for our 2025 Community Science Program Annual Call. These projects … — from freshwater estuaries reshaped by dam removal to Antarctica’s photosynthetic mats — to reveal how these systems adapt and contribute to global biogeochemical cycles. Additional …
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Awakening the Sleeping Carboxylase Function of Enzymes: Engineering the Natural CO2‑Binding Potential of Reductases
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Fungus Fuels Tree Growth
… Researchers start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.   … organic matter, or as an endophyte, living between a plant’s root cells. The fungus is almost always found among … To see how the fungus affected poplar growth, the team compared poplar cuttings grown with and without an …
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics … growth of DNA sequencing data, coupled with recent computational technology advances in management, processing … Microbiology 2018), discovery of new genes with important biotechnological applications (e.g., new CRISPR-Cas …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  … the RdRP sequence. The work resulted from a three-way collaboration that began in 2019, recalled Uri Neri of Tel … that the plethora of RNA virus sequences uncovered “significantly changes the global view of virus diversity,” though …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… On February 17, 2021, JGI and the Environmental Molecular … research proposal. Guest speaker Michelle O’Malley of UC Santa Barbara talked about how her approved FICUS proposals … Learn more  here about the “Facilities Integrating Collaborations for User Science” (FICUS) program. Letters of …
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Sequencing and functional validation of the JGI Brachypodium distachyon T‐DNA collection
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Triggering Morel Fruiting
… in China and involving Francis Martin from the Institut National de la Recherche Agronomique (INRA) in France and Igor … Morels are economically, culturally, and ecologically important fungi, widely prized as a culinary delicacy, but also … in forest ecosystems. By deciphering the fruiting-related decomposition mechanisms of morel with multi-omic approaches, …
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Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1T), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus
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