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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… is central to our ability to offer host-engineering for our users,” says JGI Director Nigel Mouncey. Using CRAGE, JGI … population dynamics in co-culture. These experiments aim to inform the engineering of stable, synthetic microbial … group of bacterial strains as part of the Community Science Program (CSP)  Functional Genomics proposal call. …
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Charting Progress toward Professional Goals
… experiences at the JGI Berkeley Lab offers a variety of programs to help inspire and train the next generation of … background, like, “what these things are specifically” and “how they relate to other different things” that they might …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… to the future of the institution. Their talks shed light on how the JGI was established, all that it has contributed, … to the JGI’s forging new collaborations with the FICUS program, through which researchers can access multiple DOE … “While I never said this out loud,” Drell said, speaking to users and staff at the JGI’s 2022 User Meeting, "I think I …
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Making a Lichen Together
… a lichen’s genomes and transcriptomes could help inform efforts at bioengineering symbiotic microbial … colleagues worked with Igor Grigoriev, the Fungal & Algal Program lead at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and his team at the JGI contributed …
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New Research Sheds Light on Diversity in the Deep Sea
… crust that emit hot, mineral-rich water. These vents are too deep in the sea to get any sunlight, and yet they still … ecosystems. This means they hold clues for understanding how life thrives in extreme environments. They also produce … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, …
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A Collaboration to Improve Plant Genome Annotations Across Species
… of Energy (DOE) Joint Genome Institute (JGI)*, a national user facility located at Lawrence Berkeley National … Faculty Investigator Jeremy Schmutz is the Plant Program Lead at the JGI. Sarah:  Why is a resource like this … understand the gene function and add additional biological information. As I’ve said earlier, 16 to 56 percent of plant …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… methane and organic matter.  However, to get all of the information that SIP offers, researchers must take on a … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … to compare?” said Malmstrom, who worked with JGI Metagenome Program head Emiley Eloe-Fadrosh to host researchers in …
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Finding the Fermenters
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … by the DOE Biological and Environmental Research (BER) program to enable scientific discovery in support of the DOE … They then used the JGI’s GOLD and IMG data portals to get information about the genomes and genes of the organisms on …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… Newly developed chemiluminescent biosensors shed light on how bacteria function and colonize diverse environments. The … through work enabled by the JGI’s Community Science Program (CSP) . The Impact Cyclic di-GMP controls microbial … and the Joint Genome Institute, a DOE Office of Science User Facility, built a chemiluminescent cyclic di-GMP …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… and direct microscopy. Through the JGI’s Community Science Program , the team used metagenome assemblies, … locations to thoroughly characterize the archaeal lineage, information that they believe will lend insights into … in these microbial mats provides the team with clues on how early life evolved on Earth as iron is believed to have …
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Frederik Schulz
… Dr. Schulz employs multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine … biogeochemical cycles. He provides his expertise to the JGI user community and supports various user projects in the Microbial Program. In an LDRD-funded project, Dr. Schulz established a …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National … some of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science …
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