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Fungal Friends or Foes in Plant Roots
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … isolates from the collection. The team then compared this dataset against nearly 80 previously published fungal genomes on the JGI data portal MycoCosm . They looked for genes known to be …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … his team then linked those species-level observations with data on microalgal communities across different ocean … from pole to pole, using metatranscriptome and metagenome data from the JGI. With multiple threads of evidence showing …
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Graduate Students Get Thesis Research Opportunity at the JGI
… at one of the DOE national laboratories or national user facilities. As a result of the latest call , a total of … mission areas across the 6 Office of Science research programs. Among the recipients of the latest SCGSR award is … to work with JGI virus researchers and harness the IMG/VR database. “The SCGSR award will further my goal of resolving …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… Genomics (formerly DNA Synthesis) call, and he noted the data had driven his lab’s focus on guide RNA library … or through the  “Facilities Integrating Collaborations for User Science” (FICUS) initiative .  Q: What is the … proposal for the technical feasibility first. Prospective users are always welcome to contact one of us about possible …
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Pinning Down a Piece of Photosynthesis
… an array of experiments at universities and national user facilities, researchers found that this protein detects … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … or DRI for short.  A kaleidoscope of structure-function data To study DRI experimentally, Blaby-Haas, Grosjean and …
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Triggering Morel Fruiting
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on just how morel fruiting is … every family of fungi. In the following guest piece, JGI user Dr. Tan details the results of the team’s work. Morels … by the black morel, as well as the gene-expression programs encoding the biochemical processes unveiled by …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… trillion. Last year, the JGI surpassed three Petabases of data sequenced — that’s three-quadrillion base pairs of DNA … computing infrastructure and analysis. This way, JGI users — both primary, data-generating users, as well as … at the JGI and Berkeley Lab were developing specific programs to handle this scale of data. Part 2: Souped Up …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … the microbes that play roles in the methane cycle. Their data report, which provides the only known reference … on a project like this because we have the resources as a user facility. The Metagenome Program team provided guidance …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  JGI Genome … ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported by the Office of Science of the …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a link in … every family of fungi. In the following guest piece, JGI user Ying Chang in the Spatafora lab describes the effort … of their well-designed sampling and analysis of their data at the time. Following the publication of their paper …
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Sequencing Submission Requirements for DNA Synthesis
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Work With the JGI! Tips for a Winning CSP Proposal
… this episode, hear proposal tips from Tanja Woyke, who runs user programs at the JGI, and project manager Miranda …
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