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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and biogeochemical … Wilkins, Colorado State University GI users and microbiome researchers Mike Wilkins and his graduate student Kaela …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
…   On November 3, 2021, the JGI and the Workforce Development & … Lab) hosted a pitch event promoting fully-supported summer research collaborations through the U.S. Department of …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… P. psychrophila genes drive resilience when salinity fluctuates. The Science The Arctic microalga Plocamiomonas psychrophila can thrive in changing conditions. A … ability to adapt to stress and rapid environmental changes. Researchers were able to identify specific genes that allow …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… As part of the JGI’s 25th anniversary celebration, the 2022 Annual Meeting featured speakers who shared a … Director of DOE’s Office of Biological and Environmental Research “There are two kinds of scientific revolutions,” …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and … plants The Science In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the model … The work (proposal: award at  … This project received funding from the European Research Council under the European Union’s Horizon 2020 …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven … The work conducted by the U.S. Department of Energy Joint Genome …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation     … of books written in a yet-to-be-deciphered language. Researchers with the Department of Energy (DOE) Joint Genome … The U.S. Department of Energy Joint Genome Institute, a DOE …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of large and … single drop of water could outnumber a small city’s population, the number of viruses in the same drop—the vast majority … study  published in the journal  Nature , a team led by researchers at the U.S. Department of Energy (DOE) Joint …
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Learning to Look
… Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” readers need to look for a number of … viruses,” said the study’s lead author Simon Roux, a JGI research scientist in the  Environmental Genomics group . …
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. The Science Regulons are … can be turned on or off by the same regulatory protein. Researchers demonstrated the efficacy and potential of … This work was supported by the U.S. Department of Energy …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct and model gene regulatory pathways used by the … We acknowledge the use of deletion strains generated by Grant P01 GM-068087 …
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against infections — using surprisingly few enzymes. The Science Maize ( … entailing the function of more than a dozen enzymes. But researchers have now revealed that just a handful of enzymes … Research was supported by grants from the USDA NIFA AFRI (1758976 to A.H. and …
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