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Metagenomes, Metatranscriptomes, and Metagenome-Assembled Genomes from Chesapeake and Delaware Bay (USA) Water Samples
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Four amino acids define the CO2 binding pocket of enoyl-CoA carboxylases/reductases
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Genome-wide prediction and transcriptome analysis of sugar transporters in four ascomycete fungi
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iPHoP: A Matchmaker for Phages and their Hosts
… be a specific host the virus has adapted to commandeer. For bacteriophage viruses, these hosts are microbes like … researchers have found more of these viruses than ever before, in all kinds of ecosystems. However, matching these … The machine learning model in the iPHoP program creates a way of evaluating these different routes. To train the …
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What Happens Underground Influences Global Nutrient Cycles
DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of Energy … of drought on plant metabolism and particularly, what happens in the rhizosphere where plants, microbes and soil …
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Laying the Foundation for a Genomic Rosetta Stone: Creating Information Hubs through the Use of Consensus Identifiers
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In-depth Spatiotemporal Characterization of Planktonic Archaeal and Bacterial Communities in North and South San Francisco Bay
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… also holds a joint appointment with the University of California, Berkeley. Nowadays, Session is an Assistant … from past genome duplication, which occurs in two basic ways. In “autopolyploids”, genome duplication occurs within … Session and Rokhsar, building on work with former JGI postdoc Jarrod Chapman, developed a method to correctly …
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Jeremy Schmutz
Genome Institute dates back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha Institute for … For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community …
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Trent Northen
… large DOE-funded research programs using mass spectrometry for energy and environmental research, including through the … the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic … Education, UC Berkeley Haas School of Business DOE Oppenheimer Science and Energy Leadership … Novak, V, et al. …
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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
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Environmental Genomics Group
… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and … Clum, A. et al. (2021)  DOE JGI metagenome workflow …
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