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Webinar: SIP technologies at EMSL and JGI
… The Environmental Molecular Sciences Laboratory (EMSL) and the Joint Genome Institute … carbon and nutrient flux, and identify microbes assimilating labeled compounds. During this webinar, EMSL’s Mary … out through the roots, into the soil, and then picked up by the rhizosphere, then that takes a little bit longer.  …
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Building Wet and Dry Lab Skills
… the second year of Alabama A&M University students coming to the DOE Joint Genome Institute for research and training experience funded by a DOE training grant.  Building off … Zhai and John Vogel from the Plant Functional Genomics Group to study the effects of  Brachypodium distachyon plant …
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Emiley Eloe-Fadrosh
… and metagenomics. Her current research focuses on leveraging thousands of metagenomic datasets from host-associated … from uncultivated microbes and viruses. Prior to joining the JGI, she was a Bioinformatics Program Fellow at the … in human microbiome research at the Institute for Genome Sciences at the University of Maryland School of Medicine …
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Learning to Look
… Machine learning approach significantly expands inovirus diversity. To … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an algorithm that a … a JGI research scientist in the  Environmental Genomics group . Training the Search Tool Inoviruses are stealth agents …
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Boosting Small Molecule Production in Super “Soup”
… chemical synthesis in the absence of cell growth by isolating the soluble components of lysed cells. By separating the … and  biofuels . This first report of their work, supported through the Emerging Technologies Opportunity … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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The JGI Data Portal: Improving User Experience
… , JGI’s Chief Informatics Officer. JGI’s Portals, including Phytozome , IMG , GOLD , MycoCosm , and PhycoCosm , … data, accessible through the Genome Portal. “The task of making data more findable and easier to download is a complex … this task. Improving the download process for this group of users offered the promise of an immediate benefit. The …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… in the Petri dish, the thin vermicelli-like threads floating delicately above the leaf debris are revealed to be … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … biology professor at the Université des Antilles in Guadeloupe, in 2009. Gros’ research focuses on marine mangrove …
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Uncovering Novel Genomes from Earth’s Microbiomes
… for multiple applications. Despite advances in sequencing technologies and computational methods in the past … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … scientist in Nikos Kyrpides’  Microbiome Data Science group. “What makes this study really stand out from previous …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… in what was billed as a typical monthly JGI All-Hands Meeting, after a couple of perfunctory items, the agenda went off the rails – … Michael Brandt (Operations Deputy), Horst Simon (Science Deputy), Jeff Blair (Chief Laboratory Counsel) and … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean …
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The Expanding Universe of Methane Metabolisms in Archaea
… than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key role in determining the … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly available metagenome … Archaea and Eukarya.   One genome, two metabolic pathways “Up to this point, most phylogenomic trees have relied on …
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Crysten Blaby-Haas
… user facility at Berkeley Lab. She is spearheading the development of a joint user capability between the … genome-encoded biomaterial discovery, design, and engineering. She earned her PhD in Microbiology and Cell Science in 2011 from the University of Florida, working with …
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Jeremy Schmutz
… with the JGI dates back to 1997, when he was working for the Stanford Human Genome Center, now the … There he constructed the pipelines for directed finishing and co-led the team that finished the DOE human … Program, focusing on the organization of community driven science for JGI Plant Flagship Genomes and DOE relevant …
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