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Picking Up Threads of Cotton Genomics
… team including researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE … for all this new cotton work, and even the original cotton project was to try to bring in molecular methods of breeding … genomes. They are annotated with the JGI Plant Annotation pipeline, which provides high quality comparisons of these …
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Tanja Woyke
After studying the mechanism of action of antifungal natural products and their … The Deputy of User Programs also acts as a liaison to our partner institutions, funding agencies and the broader …
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A Complex Confection Decoded: Sugarcane Reference Genome
… for International Development (CIRAD), and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE … Sequencing and assembling the genome required a custom pipeline and techniques. High quality primary assembly not … of Experimental Botany (IEB) was supported by the ERDF project “Plants as a Tool for Sustainable Global …
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Fungal and plant gene expression in the Tulasnella calospora–Serapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas
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Genome sequencing of Rigidoporus microporus provides insights on genes important for wood decay, latex tolerance and interspecific fungal interactions
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Virulence of banana wilt-causing fungal pathogen Fusarium oxysporum tropical race 4 is mediated by nitric oxide biosynthesis and accessory genes
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Predicting the chemical space of fungal polyketides by phylogeny-based bioinformatics analysis of polyketide synthase-nonribosomal peptide synthetase and its modification enzymes
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JGI Earth Month: Wetlands Work in #TenHundredWords
April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … Graduate Student Research (SCGSR) program . Her research project, “Microbial Community Structure and Methane … Both versions appear side-by-side below: Kaze was part of the  2018 cohort of the JGI-UC Merced Genomics …
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Danielle Goudeau
Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom … novel flow cytometry protocols for targeted recovery of specific microbes. …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate change: pulling … of this work. Cole is a research scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE … to look at gene expression in both plant cells and fungal cells. Using a technique called single nuclei RNA …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate change: pulling … of this work. Cole is a research scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE … to look at gene expression in both plant cells and fungal cells. Using a technique called single nuclei RNA …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… from their soil samples. This gene expression dataset was particularly important for characterizing fungal genes, because, unlike bacteria, they often carry … sequences assembled as part of its 1000 Fungal Genomes Project . To map microbial activity, Baldrian’s team …
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