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Depth-resolved paired metagenomes and metatranscriptomes from the Lake Erie ‘dead zone’
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SPRUCE-ing Up Science
… his backyard in Tennessee — the birds are chirping and a soft breeze ripples through the trees in his backyard. … program would best serve their quests related to processing RNA-sequencing information. According to Lawrence, this … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications. … advances in sequencing technologies and computational methods in the past decade, researchers have uncovered … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and … about the microbial communities deep underground, and before the pandemic, they took the JGI on a sampling field … published paper with first author Amundson in the journal Microbiome . The work builds off a proposal approved …
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Matt Blow
… Together, these teams provide analysis support and R&D for production and user science. He received his Ph.D. from … Cambridge University University in 2005, where he studied RNA editing and cancer genetics. Dr. Blow carried out … Nottingham University, UK PhD in Genomics, University of Cambridge, UK Postdoctoral training Wellcome Trust Sanger …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific … relevant bioenergy and environmental problems.  The mission of the National Energy Research Scientific Computing Center … discovery at the DOE Office of Science through high performance computing (HPC) and data analysis.  The DOE Systems …
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Coral life history and symbiosis: Functional genomic resources for two reef building Caribbean corals, Acropora palmata and Montastraea faveolata
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to … to establish with our stakeholders. The guiding principles for participating on JGI Advisory Committees are outlined in … users and their science including technical capabilities offered, proposal review procedures and the annual meeting. …
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Busting the Unbreakable Lignin
… New evidence shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main … enzymes highly efficient at making use of those other two components, which requires getting through the lignin.  … for lignin deconstruction. (The JGI also conducted RNA sequencing and alignment to the reference fungal  genome …
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Fungal Friends or Foes in Plant Roots
… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. … more about these other plant-fungal relationships, an international team led by graduate student Fantin Mesny in …
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Tomas Tyml
… Tomas uses traditional cultivation methods along with microscopy and genomics to study endosymbiotic associations within microbial eukaryotes. He hopes to broaden our understanding of the roles these associations play in the evolutionary …
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Trent Northen
… large DOE-funded research programs using mass spectrometry for energy and environmental research, including through the … JGI Metabolomics Program to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is … to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the …
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