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Genome Calligrapher: A Web Tool for Refactoring Bacterial Genome Sequences for de Novo DNA Synthesis
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species decompose … fungal metatranscriptome yet,” said Igor Grigoriev, Fungal Genomics Program Head at the JGI.  Along with an improved … speaker at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy & Environment Meeting, to be held in …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… a rumen sample, you’re going to find beautiful diversity.”  Within that diversity of bacteria and fungi, O’Malley and … standards.  A year later, her team used proteomics, genomics and transcriptomics to discover another advantage …
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Training the Next Generation of Talent
… in the DOE JGI/University of California, Merced Genomics Distinguished Graduate Internship Program. … UC Merced has many talented graduate students working in genomics and neighboring areas, areas the JGI is interested in. JGI would like to tap into that talent pool. At the same time, this program expands and enriches …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… the crop for additional end products. The genetic diversity within this set of plants, each with a fully-sequenced … sites. “This paper is a combination of really cutting-edge genomics and genetic analysis with large scale data … and then you are extracting links between the genetic variation and phenotypic performance,” he said. Both …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates …
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JGI Accepts 17 Proposals for Community Science Program
… Monitoring Inter-Organism Interactions Within Ecosystems Latest portfolio of approved proposals … intent submitted. Many of the proposals focus on harnessing genomics to developing sustainable resources for biofuels … the University of Pretoria and colleagues aim to unlock the genomic diversity within the eucalypts, a group of …
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Refining the Process of Identifying Algae Biotechnology Candidates
… was supported by the Bioenergy Technology Office (BETO) within the Department of Energy’s Office of Energy …
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Bioinformatics Analysis Tools for Studying Microbiomes at the DOE Joint Genome Institute
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An Automated Tool for Assessing Virus Data Quality
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Jeremy Schmutz
… Nucleic Acids Res . 51, 1–24.Lovell, JT et al. 2021. Genomic mechanisms of climate adaptation in polyploid … Nature Biotechnology 38:1203-1210. Chen, ZJ et al. 2020. Genomic diversifications of five Gossypium allopolyploid … for inflorescence development in Setaria viridis and maize. Nature Plants 3:17054. Schmutz, J, & McClean P et al. …
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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity … Lab), have taken stock of the current state of microbial genomic biodiversity. Using publicly available genome … Dongying Wu, a member of the Functional Annotation team within the JGI’s Microbiome Data Science group. “Turns out …
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