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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … to tree health and carbon storage — skills that matter increasingly as the climate warms. However, these are … to support a forest, and species vary across Earth’s ecosystems.  Recently, in work  published in  New Phytologist , …
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A Grass Model to Help Improve Giant Miscanthus
… of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass  … into how the multiple chromosomes of  Miscanthus arose by ancient hybridization (polyploidy) and insights into the … the long-term aims for bioenergy feedstock crops are increasing their yields and improving their abilities to adapt …
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Genomic Features Predict Bacterial Life History Strategies in Soil, as Identified by Metagenomic Stable Isotope Probing
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2022 Progress Report
Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National … The vision of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user …
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Cultivating the Bacterial Microbiota of Populus Roots
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A catalog of the diversity and ubiquity of bacterial microcompartments
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Persistence and plasticity in bacterial gene regulation
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Atomic-Level Models of the Bacterial Carboxysome Shell
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Accelerating Metagenomics Discoveries with Deep Learning
… layers. The architecture of these algorithms, inspired by communication networks found in nature, allows machines … biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector … in the Computational Resources Division (CRD), in order to create more useful tools for the bioinformatics community. …
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Making a Lichen Together
For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … are able to partner to form lichens. Studying the symbiosis by investigating a lichen’s genomes and transcriptomes could … reproduce: genetic recombination during sex could increase the fitness of both partners. While it’s well …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… issue of Synthetic Biology celebrates research enabled by the JGI DNA Synthesis Science Program. Fashioning DNA … This is where the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… year, the JGI team reported the first closed and finished genome derived from an uncultured bacterial single cell – a symbiont of the green … waters. The top image on the left shows how, from a single bacterial cell (seen here in a glass capillary), researchers …
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