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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… relevant to living on a changing planet. Transcript for Audio Two special days occur in April: the 50th … upstream and downstream, which is how the EPA, it’s one of the indices they use for stream health, they look at … not occurring at that pace, right. And then, hopefully, 3-400 years down the road we’ll have a steady state where we …
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Jeremy Schmutz
Genome Institute dates back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha … eukaryotic organisms from simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. Schmutz has directed … IL … Healey, A.L., Garsmeur, O., Lovell, J.T. et al.  2024.The complex polyploid genome architecture of sugarcane. …
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JGI Accepts 17 Proposals for Community Science Program
… (Berkeley Lab). They were selected through peer review from 41 full proposals out of 50 letters of intent submitted. … on harnessing genomics to developing sustainable resources for biofuels and bioproducts. Andrew Nelson of the Boyce … aims to redesign and engineer algae by identifying the algal regulators that could boost lipid production. In their …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… also holds a joint appointment with the University of California, Berkeley. Nowadays, Session is an Assistant … developed a method to correctly identify polyploid subgenomes without needing to know the genomes of their … with: Until they came up with this new method, Session mentioned that the analysis for determining the evolutionary …
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Expanding Virophage Diversity
Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the virophage marker gene MCP, they were able … 10.9-42.3 Kb. Additionally, the gene counts have similarly gone up from 13-25 to 12-39. “Overall,” the team concluded, …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
For the first time in several years, the DOE Joint Genome … Class using CRAGE Technology Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by … and Analysis of Eukaryotic MAGs from Novel Taxa Christopher Bivins and mentor Satria Kautsar, Comparing BGC …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… (Berkeley Lab), comes in. The JGI is uniquely positioned to enable this kind of science; through its DNA … PI on this project. “I view the program as an excellent platform to build collaborative research initiatives.” Yasuo … enzymes and how they grab hold of different substrates. By analyzing these relationships with machine learning, they …
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Genome Analysis of Planctomycetes Inhabiting Blades of the Red Alga Porphyra umbilicalis
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Genomic Analysis of Organismal Complexity in the Multicellular Green Alga Volvox carteri
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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
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Filling in the Plant Tree of Life
… food, medicine, and bioenergy crops. But most available genomes are from narrow swaths of the plant tree of life. One project aims to change that. …
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