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Genome sequencing and analysis of the model grass Brachypodium distachyon
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Genome Analysis of the Anaerobic Thermohalophilic Bacterium Halothermothrix orenii
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A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, JGI’s Zhong Wang and Science Programs Deputy Axel Visel teamed with University of … staff, Mouncey explained: “One of the hallmarks of JGI is our diverse workforce and our diverse collaborators around …
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Development of a Freeze-Dried CRISPR-Cas12 Sensor for Detecting Wolbachia in the Secondary Science Classroom
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available fungal … potential for AI-driven studies of energy metabolism. The Science Researchers produced nearly 10,000 new annotations … standardized structure of the dataset position it as a resource for AI-driven approaches to predicting fungal …
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Green Algae Reveal One mRNA Encodes Many Proteins
… reported in the Proceedings of the National Academy of Sciences , a team of researchers has found numerous examples … zofingiensis . “I was scrutinizing the genes of one of our species of algae and kept seeing what looked like … and first author of the article. The research team included scientists at the University of California (UC), Berkeley, …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… bioeconomy, including, potentially, methane as an energy source.  Until recently, our understanding of these … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of a microbial community out in its natural environment, scientists have shown at least two microorganisms from …
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Protocol for single-cell isolation and genome amplification of environmental microbial eukaryotes for genomic analysis
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, … and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement … the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics department head.  Dr. Fagnan is also …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from the 1000 … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … working to address some of the most pressing challenges of our time. For more information, please visit  …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… provide insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within … (IMG/M) platform — has been developed to help inform scientists and researchers more about the patterns and … mSystems paper , a team at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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