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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… determination as they came onsite. From data carpentry to science communications, their schedules were filled with … skills, wet lab skills and overall connections. Theo Loureaux : I wanted to first discover new methods with tools … limited experience with, and to do so with some of the top scientists in that subfield.     Byline: Graham Rutherford …
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The Expanding Universe of Methane Metabolisms in Archaea
… atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and Simonetta Gribaldo of the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly available metagenome …
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CSP Functional Genomics
… function.  The emphasis is on projects leveraging JGI’s DNA synthesis and ‘omics capabilities to enhance … synthetic biology review process .  … Proposers are encouraged to review the JGI’s sample requirements . Samples … questions prior to proposal submission.   … Additional Resources …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… genes drive resilience when salinity fluctuates. The Science The Arctic microalga Plocamiomonas psychrophila can … recorded. Samples were taken again at two, six, 12 and 24 hours. By the 24-hour mark, these algae showed significant … increased nutrient uptake and decreased cell death.  Scientists then extracted RNA to analyze gene expression, to …
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The Power of One, Amplified
… single cell genomics complements metagenomics studies. The Science Researchers demonstrated the value of conducting … genomes then amplified and sequenced individually, offering scientists the opportunity to apply population genomics … microbial populations. The work appeared in The ISME Journal . Members of the Dunfield lab collected samples from …
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Dan Rokhsar
… over fifty plant and animal genomes. He currently leads the JGI’s Computational Genomics group, and is past lead of the Eukaryotic Genome Program (2010-2019), and JGI Chief Informatics Officer (2013-2016). Dr. Rokhsar …
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A Mentor’s Perspective on Training the Next Generation
Over the years, hundreds of interns have come to the JGI from all parts of the globe to gain lab experience and … they’ve all mentioned how invaluable their time at the JGI was and how great it was to have an experienced career scientist as a mentor.  …
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Supercharging SIP in the Fungal Hyphosphere
… helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a … is a long and laborious process — as well as a key way scientists study microorganisms. Because microorganisms live … HT-SIP is a capability available to request through  the JGI proposal calls . … Work at Lawrence Livermore National …
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Pinning Down a Piece of Photosynthesis
Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … National Laboratory’s National Synchrotron Light Source II, and SLAC National Accelerator Laboratory’s … in complementary ways to investigate this protein domain. Scientists at Brookhaven National Laboratory’s NSLS-II used …
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David Goodstein
… basal metazoans and plants. Working with a talented team of scientists and software engineers, Dr. Goodstein currently … for the JGI's direct collaborators and the wider plant science community. Dr. Goodstein’s group also develops and … 2023. JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the …
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Calculating the Costs of Multiple Switchgrass Gene Copies
Scientists have discovered that the candidate bioenergy … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered that the candidate … evolutionary consequences. A previous study conducted by our research team surveying the genomic and phenotypic …
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