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An Enzyme System to Help Catalyze Bioproduction of Plastic
… For bacteria, that salty, slightly stinky air is a rich source of the sulfur they need to grow and divide. Similar to … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … with understanding enabled by Basic Energy Sciences (BES) programs, they were able to multiply the insights that each …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from the 1000 … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and Environment (INRAE). Remarkable Similarity Despite Vast Diversity For this study, researchers collected soil samples …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered that the candidate … evolutionary consequences. A previous study conducted by our research team surveying the genomic and phenotypic diversity across the natural range of switchgrass found that …
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Rex Malmstrom
… His group also handles the Stable Isotope Probing (SIP) Metagenomics pipeline  that reveals in situ functional … in metabolically active, membrane-bound organelles. Science  376,1453-1458 Nuccio et al 2022 . HT-SIP: a … unicellular marine predators.  PNAS 116 (41), 20574-20583 Couradeau, J.S. et al. 2019. Probing the active fraction of …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… talk and a tech talk. Stop by the JGI booth to learn about our user programs and how we can help advance your science. …
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Microbial life under ice: Metagenome diversity and in situ activity of Verrucomicrobia in seasonally ice‐covered Lakes
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Diversity and function of methyl-coenzyme M reductase-encoding archaea in Yellowstone hot springs revealed by metagenomics and mesocosm experiments
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… to the worldwide scientific community through its  User Programs on a competitive, peer-reviewed basis. Speakers and … a keynote speaker addressed the conference, sharing the journeys of their research careers, and showcasing the broad … of the 2023 JGI Annual Meeting. As the JGI’s Metagenome Science Program Head, Emiley Eloe-Fadrosh, introduced Bruce …
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How to Target a Microbial Needle within a Community Haystack
… microbes from complex environmental samples. The Science A team led by researchers at the Max Planck … of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of … DNA could be sequenced. Their protocol,  detailed in the journal  Microbiome , combines multiple techniques and was …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… PacBio reads (i.e., reads with very low error rate), so our pipeline performs long-reads-only assemblies and not … Depending on the project setup, we can include as part of our data analysis plan mapping of short-reads datasets … A:  Long-read metatranscriptome / RNA metagenomes are on our radar, but we don’t offer these at this time. Q:  How …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … the human language—are well positioned to help enhance our understanding of life’s genomic code, advancing DOE … its demand for substantial operational resources.  ”The metagenomics data generated by the JGI are very …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… bioeconomy, leveraging partnerships to advance foundational science, creating opportunities for the global research … and stimulate a bioeconomy, where renewable, biological resources drive processes, products, and services.  Advancing … for bioproducts to support the bioeconomy. Functional diversity theme. Reading the genomes of individual organisms …
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