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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… into a written report that is published in a scientific journal is the ultimate achievement. To get to this point … her summer internship in 2018. She selected one of the projects posted by JGI fungal researchers, Igor Grigoriev … now in her final year of PhD research at UC Merced. She plans to continue expanding her understanding of mathematics …
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Picking Up Threads of Cotton Genomics
… look like popcorn is literally growing on plants, with fluffy white bolls bursting out of the green pods in every … underscores its value and importance in the fabric of our lives. In the United States, cotton production centers … added. “We must be careful who we ask to take on these projects due to their difficulty and complexity, but we have …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… evolutionary consequences. A previous study conducted by our research team surveying the genomic and phenotypic … across the species. These are primarily tetraploids (4X or four copies of the genome) and octoploids (8X or eight copies … we also hoped to use this unique opportunity to quantify how transitions to higher ploidy could be generating …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… separating urine from other waste streams and recovering resources that could be used for products such as agricultural … developed with funding from the Defense Advanced Research Projects Agency (DARPA) as part of the Bio-inspired … From our partners … From our partners …
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Filling in the Plant Tree of Life
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An Earth Month Look at Sustainability Efforts at the JGI
… for the wider Berkeley Lab. “We’re shifting now to our net-zero strategy. And so we’re looking at the overall greenhouse gas impacts from all of our operations,” said Brie Fulton, program manager for  … stations, rather than under desk trash bins . These encourage everyone to sort all waste into compost, recycling …
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How Filamentous Fungi Sense Food
… by the filamentous fungus  Neurospora crassa, and to identify and decide on the order in which this fungus breaks down … importantly, when faced with a veritable buffet of carbon sources, these fungi detect which complex chains are … regulatory networks as they responded to available carbon sources, which ranged from simple sugars to plant biomass. …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… the human language—are well positioned to help enhance our understanding of life’s genomic code, advancing DOE … the health care to the financial sector — whether to identify studies and protocols or analyze and predict market … many terabases of sequences from large metagenome projects — ultimately assembling over 220 Tb of sequences …
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JGI-UC Merced Interns Share Their 2021 Experiences
… virtually with JGI mentors to investigate rigorous research projects, hone science presentation skills, and participate …
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Silver age of GOLD introduces new features
… Genomes OnLine Database celebrates 25 years as a vital resource for data contextualization The Science Since its … ago, the  Genomes OnLine Database has matured from six projects on a spreadsheet into a flagship  genomic metadata … with them. GOLD provides manually curated metadata resources for organisms and environmental samples. The database …
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JGI@25: Building a Better Bean
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science … the common bean (Phaseolus vulgaris) is actually a vital source of protein in many food-insecure countries around the … a 473-million basepair genome of the common bean, identifying genes related to disease-resistance, flowering time, …
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Toward More Efficient Artificial Photosynthesis
… current natural processes and use it as a sustainable resource for making high-value bioproducts. As a step toward … was enabled in part through the Community Science Program (CSP) of the U.S. Department of Energy (DOE) Joint Genome … (Berkeley Lab). Supporting the Erb lab through the CSP Functional Genomics call, the JGI synthesized library of …
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