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Eelgrass Proves to Be Much Younger Than We Thought
… one of the most abundant plants in the ocean, originated in Japan before spreading around the globe. Now, … its history. Their research, published in  August 2023 in  Nature Plants , was able to assess absolute time estimates … eelgrass used in the study to reveal colonization events.  Looking ahead, scientists can use this information to assess …
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Boosting Small Molecule Production in Super “Soup”
Do metabolic pathways from engineered yeasts still work in cell-free … running smoothly. As reported August 26, 2021, in Nature Communications , researchers led by Hal Alper at The … a key platform organism that has been used historically for making sustainable products in industry.” From Cell to …
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An Automated Tool for Assessing Virus Data Quality
… can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, more and more virus sequences are being … of metagenome-assembled viral genomes . The Impact The microbes that play key roles in cycling nutrients such as …
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What Happens Underground Influences Global Nutrient Cycles
DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities Integrating … 2014 to learn more about the microbial responses and feedbacks to warming through the whole soil profile. The goals … particularly, what happens in the rhizosphere where plants, microbes and soil interact below the ground, influencing the …
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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity hotspots Over … January 17, 2025 in Science Advances , researchers at the U.S. Department of Energy (DOE) Joint Genome … art of hands-on microbiology and experimental validation.  Microbes run the world, playing key roles in regulating …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
Register here Book your stay at the conference venue This inaugural event will bring … and disciplines who are developing and applying laboratory ecosystems to help transition microbiome science from largely observational to reproducible mechanistic studies.  This …
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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE … from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
Internship Program was brimming with excitement and determination as they came onsite. From data carpentry to science communications, their schedules … interning at the JGI has been the ability to sort of step back from my typical work and sort of jump feet first into …
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Scaling Up Existing Skill Sets
UC Merced students with seven JGI researchers for bioinformatics internship opportunities in fields ranging from … the JGI has really motivated me to think outside of simply looking for jobs/postdocs in industry or academia. It was … to reach out to anyone in the Institute to get feedback and insights on the project and everyone’s willingness …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… to the naked eye, microscopy reveals unexpected complexity At first glance, the slightly murky waters in the tube look … research focuses on marine mangrove systems, and he was looking for sulfur-oxidizing symbionts in sulfur-rich … known as BONCAT to identify areas involved in protein-making activities, that confirmed that the entire bacterial …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will … green sharpshooter. In 2012, single cells isolated from the microbes found in the oil plume from Deepwater Horizon oil …
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most … the genomes and predict the metabolic abilities of these microbes. The Impact This study illustrates how the research …
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