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From Berkeley to Binghamton: Tracking Strawberry Evolution
In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also … Session and Rokhsar, building on work with former JGI postdoc Jarrod Chapman, developed a method to correctly … the complicated evolutionary history of strawberry in such detail is biologically interesting,” Session said.  The …
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Machine learning sheds light on microbial dark proteins
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Year in Review: JGI’s 2018 Progress Report Available Now
The latest edition of the JGI Progress Report highlights notable … lake east of California’s Yosemite National Park, taken by JGI’s own Jon Bertsch. Microbes isolated from Mono Lake were …
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Ancient Algae Reveal Secrets of Plant Evolution
Research uncovers the genetic foundations that helped plants conquer land over 600 million … and multicellularity enabled plants to develop complex structures and adapt to changing environments — ultimately … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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User Support Analysis Group
The User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse … of highly customized analysis workflows for new product types, to the development of automated analysis …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets to maximize returns on … this to untangle which microbes ate the compound and how much they ate.  These analyses provide granular insight into …
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A Natural Mechanism Can Turbocharge Viral Evolution
… this means using proteins on its tail fibers to latch onto a specific target on the microbial cell’s … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at … new microbial prey. The Impact This research provides a much more comprehensive understanding of how a fundamental …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, … send their samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora crassa . The … California, Berkeley used a multi-omics approach to reconstruct and model gene regulatory pathways used by the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Nikos Kyrpides
… the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and … Human Intestinal Tract ( MetaHIT ); Community Cyber-infrastructure for Advanced Marine Microbial Ecology Research and … Analysis ( CAMERA ). … Education … Selected Publications … Awards and Service …
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Gut Fungi: Unexpected Source of Novel Chemicals
… complex compounds — an energetically expensive feat thought to be too costly for them. The Science Anaerobic … the energy to make complex compounds called natural products . Yet, combing through the genomes of four anaerobic … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Integrating Experimentation with Data
…   Join the Joint Genome Institute (JGI) and the Environmental Molecular Sciences Laboratory (EMSL) for “Empowering Automated Laboratories: … poster sessions, thought-provoking flash talks, and instructive workshops. Researchers from academia, government, and …
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