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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a close look at more ecosystems and organisms than … primary, data-generating users, as well as secondary, data-downloading users — have access to high-quality, assembled …
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Synthesis
… Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is … automations for DNA design, assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables users to validate … Check out our organism-agnostic CRISPR gRNA design tool  …
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Draft Genome Sequences of Chlamydiales Bacterium STE3 and Neochlamydia sp. Strain AcF84, Endosymbionts of Acanthamoeba spp.
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… Congratulations to Susannah Tringe , one of eight scientists and engineers … gas emissions, and water recycling.” Tringe is the interim director of Berkeley Lab’s Environmental Genomics and Systems Biology Division, and JGI’s deputy for user programs. She also leads the JGI’s …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora crassa . The … and decide on the order in which this fungus breaks down plant cell wall materials including lignin, cellulose … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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From Competition to Cooperation
… 135 fungal sequenced genomes, researchers were able to carry out a broader analysis than had ever been done … of fungal saprotrophs in the forest. White rot can break down the cellulose, hemicellulose, and lignin in plant cell … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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When “The Blob” Made It Hotter Under the Water
… marine microbes and by extension, the ocean’s capacity to act as a carbon sink. Summary As global temperatures … when The Blob started. The samples were taken up and down the water column along the Line P transect, a series of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Taking Stock of the Known and Unknown Microbial Space
… decades, advancements in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Biological and Environmental Research (BER) missions. The JGI provides integrated high-throughput sequencing and …
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Steven Wilson
… applications that span the lifecycle of activities at JGI - proposal submission and review, project and work order creation and management, automated sequence quality control and automation of … approach, an ability to work with others to break down complex issues into achievable tasks, and an ability to …
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Tanja Woyke Elected to American Academy of Microbiology
… Congratulations to the JGI’s Tanja Woyke , who has been elected to the … of California, Merced. Woyke received a 2014 Berkeley Lab Director’s Award for Exceptional Scientific Achievement , …
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What Happens Underground Influences Global Nutrient Cycles
… DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through … user facilities—the  Environmental Molecular Sciences Laboratory (EMSL) and the  DOE Joint Genome Institute (JGI)—have … being conducted through the  Belowground Biogeochemistry Scientific Focus Area (SFA), supported by the Terrestrial …
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A Complex Confection Decoded: Sugarcane Reference Genome
… reference quality genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science … The Impact In providing a reference sugarcane  genome , the JGI provides foundational genetic information that crop … reference sequence of sugarcane was published as a step forward in this effort. Sequencing and assembling the …
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