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Introducing New Members of the JGI User Executive Committee
… had their own reasons for wishing to serve on the UEC. For microbial ecologist Gilbert at the University of California … to technical capabilities JGI offers, as well as proposal review procedures and the organization of the JGI Annual … terms. The JGI solicited UEC nominations in late 2022 and the election period concluded on Jan. 6, 2023. With …
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Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution
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Optofluidic Raman-activated cell sorting for targeted genome retrieval or cultivation of microbial cells with specific functions
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… DOE Joint Genome Institute (JGI), Molecular Biophysics and Integrated Bioimaging (MBIB) Division, and Energy Storage & … already identified a lot of synergies. To bring together expertise of the involved institutions will give us the … science, energy conversion and water treatment as well as microbial ecology with a focus on metabolism and ecosystem …
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Open Frameworks Training the Next Generation of Scientists
… genomics. Fungi can be better understood through reference genomes, but unfortunately there are not many available to … study. This is because most fungal clades have no reference genomes. It’s a key problem to solve because fungi are very … (Module 1), Experimental Design and Sample Metadata (Module 2), Sample Collection and Processing (Module 3), Data …
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Natural Prodcast Episode 22: Alison Narayan
… WINTER: I mean. ALISON NARAYAN: Yeah, this is beyond my expertise and being able to predict which enzymes might have … has to do with the mechanism. And so these enzymes use O2, and one of those oxygen atoms gets incorporated into our product, and one of those oxygen atoms from O2 ends up as a molecule of water. DAN UDWARY: Mhm. So …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. … 4, 2019, issue of Nature Microbiology , they mined the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational …
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The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat
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A Community Resource for Secondary Metabolite Researchers
… in developing a secondary metabolites portal within the Integrated Microbial Genomes and Microbiomes (IMG/M) system known as IMG-ABC. … Office of Science of the U.S. Department of Energy [DE-AC02-05CH11231]. …
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The More the Merrier: Making the Case for Plant Pan-genomes
… the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two … flowering plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many genes after such events, returning their genomes to a diploid state while retaining multiple copies …
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Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass
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High-resolution phylogenetic microbial community profiling
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