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JGI announces final round of 2022 Functional Genomics awardees
… research from potential users who need help translating genomic information into biological function. Through our CSP Functional …
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Data Policy
… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… 25th anniversary. Over the last year, we’ve been revisiting a number of notable achievements that showcase our … to find beautiful diversity.”  Within that diversity of bacteria and fungi, O’Malley and her team are amassing all … to identify and test carbohydrate-active enzymes. They found many enzymes that outperformed industry standards.  A …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a link in the evolution … with various origins, ranging from fungi, plants to bacteria. Back in 2011 when these genome and transcriptome …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
Researchers from the JGI recognized for their “significant influence in their chosen field or fields through the … to reliably match viruses with their archaea and bacteria hosts.  Jeremy Schmutz’s 2023 published work … population genomics to investigate archaeal hitchhikers and found that, while they often act as parasites, others …
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Nikos Kyrpides
Systems. Mol Cell . S1097-2765 Schulz F, et al. 2020. Giant virus diversity and host interactions through global … Roux S. et al. 2019. Cryptic inoviruses are pervasive in bacteria and archaea across Earth’s biomes. Nature … Fellow (2014) Academic Excellence Prize Award, Empeirikeion Foundation (2012) Outstanding Performance Award, Lawrence …
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Honey Bee Gut Microbiota Divvy Up Dinner
Scientists find bee gut microbes have a division of labor when it comes … yield sugar monomers, it’s only with the aid of specialized bacterial enzymes. Honey bees rely on their gut microbiota … honey bee and bumblebee gut microbiomes. Researchers found that pollen’s pectin and hemicellulose are degraded …
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Daniel Udwary
… for JGI’s Secondary Metabolites group. His research interests lie in use and development of bioinformatics tools for elucidation of biosynthetic gene clusters in bacteria and fungi. Prior to joining the JGI, he spent time …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have … the cells of other organisms. As they infect microbes like bacteria, algae and protists, all kinds of viruses impact … be done” Roux said. And in just 6 years, IMG/VR has built a foundation for finding more of those details from all kinds …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… between fungal guilds, genes and function. If a tree falls in the forest — whether or not anyone registers the sound — … had to work outside of taxonomy. “And the way we found was to focus on comparison of expression levels … that enable systems-based scientific approaches to these challenges.  DOE’s Office of Science is the largest …
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Tracking the Origins of Methane-Producing Microbes
Mini-Metagenomics Approach Helps Identify Novel Archaeal … known as Mcr. Until recently, the Mcr gene cluster was found only in the archaeal lineage Euryarchaeota; recent … that enable systems-based scientific approaches to these challenges.  DOE’s Office of Science is the largest …
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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons on … Duke University, published their research related to how bacteria that colonize the roots of sphagnum work to … the carbon-sequestering abilities of peat moss. Peat is found in the temperate north, in U.S.-based places like …
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