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Old can be new again: HAPPY whole genome sequencing, mapping and assembly
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Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism
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Label-free structural imaging of plant roots and microbes using third-harmonic generation microscopy
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of … Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We noticed a few years ago that … factors bind in the genome. A key aspect of the project is understanding what TFs and regulatory networks …
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A User-Centered Approach to Accessing JGI Data
… (https://data.jgi.doe.gov/) launched last year, it was only accessible through the plant portal  Phytozome . Now … limited to: Public data: datasets associated with completed projects that are eligible for public release, have … The Data Portal presents the users with the standard  JGI Data Release Policy information when they request a …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately … Berkeley National Laboratory (Berkeley Lab), led the project. He explained that large language models—artificial … said. “Natural language has grammar and structure, and words set up in a certain way. Genomes work in a similar …
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A near complete snapshot of the Zea mays seedling transcriptome revealed from ultra-deep sequencing
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Contrasting Life Strategies of Viruses that Infect Photo- and Heterotrophic Bacteria, as Revealed by Viral Tagging
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A framework genetic map for Miscanthus sinensis from RNAseq-based markers shows recent tetraploidy
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Diverse Marinimicrobia bacteria may mediate coupled biogeochemical cycles along eco-thermodynamic gradients
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Community Structure and Function of High-Temperature Chlorophototrophic Microbial Mats Inhabiting Diverse Geothermal Environments
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Extracellular Electron Transfer May Be an Overlooked Contribution to Pelagic Respiration in Humic-Rich Freshwater Lakes
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