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Marine Microbe Contains Multitudes
… with different lifestyles. The Science The bacterium SAR324 is unusually cosmopolitan. In the ocean’s North Pacific … microbes tend to stay localized at different depths. But SAR324 can be found throughout the water column, from the warm, … cruises in 2015 and 2016. At Station ALOHA , site of the 30-years-long Hawaii Ocean Time-series (HOT), they collected …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… a genome duplication event that occured some 60 million years ago. Massive gene loss, rampant gene duplications, and … generate high-quality genome assemblies and annotations for 35 species representing all major evolutionary lineages in … of Energy operated under Contract No. DE-AC02-05CH11231.This work was supported by US National Science Foundation …
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Corymbia Genome Expands Terpene Synthesis Knowledge
…  genome project was supported by FAPDF grant “Nextree” 193.000.570/2009. For the portion of the work conducted by the … U.S. Department of Energy under Contract No. DE-AC02-05CH11231. …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… space that has resulted in many impactful papers in recent years, but are also looking forward to jointly expanding …
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Making a Lichen Together
… that in this symbiosis going back hundreds of millions of years, accidental gene swaps via horizontal gene transfer … and Policy (for DNA sequencing and assembly); by a three-year subcontract to DA, FL, and FD (for bioinformatics) from … by a DOE-Biological Environmental Research grant No FWP 61327 to FRC and PL (for RNAseq). The work at the Joint Genome …
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Open Frameworks Training the Next Generation of Scientists
… services and analysis—to participants. Over the past two years, Myco-Ed has been used in 15 individual classrooms across the country, training 316 students in fungal biology, bioinformatics, and … (Module 2), Sample Collection and Processing (Module 3), Data Analysis in KBase (Module 4), and Conclusions and …
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JGI@25: Building a Better Bean
… common bean’s nutritional value, providing anywhere from 10-30% of daily protein requirements. It is also an essential … for large producers. The team sequenced and assembled a 473-million basepair genome of the common bean, identifying … iron content and have a longer shelf-life — up to four years. Work is now underway to transfer the trait into other …
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JGI@25: Studying Sorghum’s Survival Skills
… reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have cited that genome. Since publishing that … team studied sorghum plants in drought conditions for three years (2016-2018) in the field in Parlier, California at the …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE … The work is supported by NIH Common Fund grant 1U01DE034196-01. The JGI team, including Kyrpides, Camargo, and … viruses of archaea and bacteria ( PLoS Biol , 2023). These tools have significantly advanced the field by …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… fungal enzymes actually outnumbered bacterial enzymes 3-to-1. Additionally, the fungal enzymes the team found … and the Environmental Molecular Sciences Laboratory (grid.436923.9), which are DOE Office of Science User Facilities. Both …
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JGI@25: The Little Alga That Could
… a partial sequence of Chlamydomonas reinhardtii in 2003; then in 2007 the full genome was sequenced and published … that those sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The … that in the original strain, a protein called RECQ3 helicase is entirely deleted, potentially resulting in …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Germany. The BGC Repertoire in Actinobacteria Over the years more than 3,400 genomes have been sequenced from curated DSMZ …
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