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The JGI Data Portal: Improving User Experience
… of focus and data and computational needs. Over its 23-year history, JGI has produced more than 13 petabytes of …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in symbiosis with plant … to date. This paper  is the cover article for the April 2024 issue  of  Nature Plants .  “We wanted to better … Cole led the work in collaboration with JBEI as part of the 2021 Laboratory Directed Research and Development (LDRD) …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth Day on April …
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JGI at the AGU Fall Meeting
This year the AGU Fall Meeting, with the theme “Science is …
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Training the Next Generation of Talent
… of California, Merced to start orientation as a first-year graduate student in the Quantitative Systems Biology … I’ll take that knowledge back with me.” Now a second-year evolutionary biology student in David Ardell’s lab, he … that’s going to be generated at academic level in a few years as it’s getting closer to producing trillion base data …
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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after … into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead with a … JGI workloads. Dr. Fagnan was appointed CIO of the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
Complex Systems (LRC) in Menlo Park, Calif. In the June 24, 2022, issue of the journal Science, Volland and colleagues, … conducted some microscopy studies over the next couple of years, and realized it was a sulfur-oxidizing prokaryote. … the study, performed the 16S rRNA gene sequencing to identify and classify the prokaryote. “I thought they were …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… proposals previously accepted through JGI’s calls. Nearly 200 Terabases of data are expected to be generated for the … Through the Tara Oceans Expeditions that took place between 2009 and 2013, the  Chaetoceros genus has been identified as … as he had an accepted new investigator proposal last year, and he noted that the experience proved beneficial for …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… the JGI DNA Synthesis Science Program, which started in 2012, and what they’ve discovered through their … papers, including two Nature Plants publications, in five years, have come out of the JGI-supported project. “The JGI … of the DNA Synthesis Science Program by applying to the year-round Community Science Program Functional Genomics …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… a genome duplication event that occured some 60 million years ago. Massive gene loss, rampant gene duplications, and … (Berkeley Lab) took on the Open Green Genome Initiative in 2018 as part of its Community Science Program. The OGG has … for 85.2% of the C-fern assembly. While they did identify a couple WGD events, these events could not fully account …
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Eelgrass Proves to Be Much Younger Than We Thought
… study shows eelgrass has been around about 2.5 million years less than previously believed.  The Science Eelgrass, … its history. Their research, published in  August 2023 in  Nature Plants , was able to assess absolute time … that eelgrass began colonizing the oceans  about 3 million years ago. The study shows that figure is likely closer to a …
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Cultivating Symbiotic Antarctic Microbes
… to that of a free-living organism. First discovered in 2011, Nanohaloarchaea are part of the DPANN (Diapherotrites, … outlined by JGI scientists and their collaborators in 2013. While most DPANN lineages are predicted symbionts, the … was supported by the EMBO Long-Term Fellowship ALTF 188 –2014, which is co-funded by the European Commission …
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