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An Automated Tool for Assessing Virus Data Quality
… and more virus sequences are being recovered and identified from environmental samples (metagenomes). However, the … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … environments. Environmental DNA sequencing can help scientist to recover the genomes of these viruses and associate …
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Hydrogen production in photosynthetic microbial mats in the Elkhorn Slough estuary, Monterey Bay
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent greenhouse gas, regulate Earth’s climate. Most methane is produced in environments … the microbes you can grow in the lab — suddenly you see everything, and then you’re amazed.”  From there, they were …
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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Forming Scientific Connections and Building Community
… interns pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome … them, applying those same principles to my own research and everyday routines.” Mentors: Jessen Bredeson & Albert Wu Project: …
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The Case for Conservation
… crop yields.  The Science The fire moss Ceratodon purpureus is a short plant with a complex genome . Now, high-quality … Carey put it, these sex chromosomes first evolved when the Earth’s continents were still Pangea. McDaniel’s lab … to evolve so rapidly in gene content and structure. He and JGI Plant Program head Jeremy Schmutz already see how …
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Informatics Advisory Committee
The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. The IAC is chartered to render advice, …
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When “The Blob” Made It Hotter Under the Water
Data from marine heatwave event may foreshadow climate change … to act as a carbon sink. Summary As global temperatures rise, so do instances of extreme weather events such as … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Emiley Eloe-Fadrosh
Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial … Microbiome Data Collaborative (NMDC). … Emiley Eloe-Fadrosh is the Metagenome Science Program Head at the JGI. Click to … Nayfach A, et al. 2021. A genomic catalogue of Earth’s microbiomes. Biotechnol . doi: …
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Genome Sequence of Victivallis vadensis ATCC BAA-548, an Anaerobic Bacterium from the Phylum Lentisphaerae, Isolated from the Human Gastrointestinal Tract
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
With a new methodology, scientists are now getting more complete genomic results from … incredibly useful for understanding the microbiome of the earth, but most species do not grow easily in the lab. To … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Plant–microbiome interactions: from community assembly to plant health
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