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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in wild populations … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … this phenotype.’”  Results from A “Massive Amount” of Sequencing  Seed dispersal is critical for plants in the …
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Nandita Nath
… to improve genome recovery from single cells and to build sequencing libraries from minimal DNA input without amplification. …
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Supercharging SIP in the Fungal Hyphosphere
… and fungi The Science Researchers have successfully automated aspects of a commonly-used process for studying … isotope to it. The isotopes are incorporated into the DNA of specific microbes who consume the labeled food or … at a larger scale through downstream DNA purification and sequencing steps. Ultimately, researchers found their …
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Promoting the Power of Viral Metagenomics
… published in the journal  Annual Review of Biomedical Data Science . The following guest piece was written by Call, … Currently one of the best ways to study such viruses is by sequencing the bulk DNA or RNA contained in a sample that has been collected … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… fungi of Chytridiomycota (the “chytrids”).  A collaborative team led by Joey Spatafora at Oregon State University, … multiple times in order to obtain enough zoospores. DNA and RNA samples generated from the zoospores were then sent to the JGI for whole genome sequencing using the Illumina platform. Unfortunately, both …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… New 5-year strategic plan outlines how the JGI will advance the bioeconomy, leveraging partnerships to … the genomes of individual organisms or environmental DNA, and then using advanced capabilities to understand …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The … specific 5mC methyltransferase (MTase) variants. Using new sequencing technologies for producing both reference genomes … Core (GGBC) at the University of Georgia provided sequencing and computational resources, respectively. This …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … are partnering with Yasuo Yoshikuni and Ian Blaby of the DNA Synthesis Science Program . “This collaboration brings …
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Pinning Down a Piece of Photosynthesis
… are easy to point out. Plants, algae and cyanobacteria create the air we breathe and the fuel for food webs as they … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … to the protein parts of that machine — photosynthesizers’ DNA and RNA. These sequences provide a list of machine …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … are partnering with  Yasuo Yoshikuni and  Ian Blaby of the  DNA Synthesis Science Program . “This collaboration brings …
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Picking Up Threads of Cotton Genomics
… and importance in the fabric of our lives. In the United States, cotton production centers around two varieties: 95 … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … their genomes were “remarkably” stable. “We thought we were sequencing the same genome multiple times,” Schmutz …
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and other institutions … deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered from whole samples rather than … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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