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A Plant Root Atlas for Tracking Developmental Trajectories
… the  Arabidopsis root, profiling nearly 100,000 single root cells and combining the information with previously … the roles played by neighboring cells in these processes.   One of the study’s co-authors is  Benjamin Cole , a research … research by then-Biosciences scientist Diane Dickel in 2017. In 2019, plant single-cell methods were officially called …
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Frederik Schulz
… Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life Group. His research … multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to … protists. These approaches enable novel insights into the diversity and important ecological roles of microeukaryotes …
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Team Science Reveals Important Protein in Poplar
… Described as the “DOE Tree,” poplar is considered one of the  Flagship Plants for the U.S. Department of … nutrient-poor land, drought and disease.  Summary In the 1970s, the DOE  targeted poplar as its primary wood crop for … in   iron deficiency response, formation of secondary cell walls (biosynthesis), and integrating molecules that …
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Effects of sample treatments on genome recovery via single-cell genomics
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Cataloging the Microbes that Manage the Health of River Systems
… watershed scale models to manage river ecosystems. One application for the information is the development of … into such bodies of water before heading out to bays and oceans. While river microbes are critical to monitoring and … collected through WHONDRS, a community science river sampling program at Pacific Northwest National Laboratory. …
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JGI Scientists Pen Genome Watch Articles
… Microbiology .  The latest article, published January 27, is about engineering plants and their microbiomes for … Emiley Eloe-Fadrosh ,  Metagenome Program lead, shone a spotlight on  ammonia oxidizing archaea and what we’re … so far selected the authors of these pieces to represent diversity in research area, gender, as well as stage of …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… at the University of Hawai’i at Mānoa. I recently caught up with Karolina at the Plant and Animal Genomes, or PAG … to deal with hot and dry conditions could help us to one day develop plants that are more drought-tolerant. These … podcast, Genome Insider. I’m Alison Takemura. See you next time. …
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DAP-seq Drives Robust Mapping of Gene Regulation
… a single experiment — and integrated these data with single-cell gene expression maps. Together, the scale of data … ability to chart regulatory networks across evolutionary time and diverse plant lineages. Aligning with U.S. … adaptation. “You learn a lot more than you would from each one individually,” Baumgart added. “By combining these data, …
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Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants
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Cell Wall Compositions of Sorghum bicolor Leaves and Roots Remain Relatively Constant Under Drought Conditions
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Cell Extracts from Bacteria and Yeast Retain Metabolic Activity after Extended Storage and Repeated Thawing
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Extracting the Secrets of Secondary Metabolites
… As a demonstration, the researchers used CRAGE-CRISPR for discovering active secondary metabolites and helping them … hit the scene in 2019. Now, that power is poised to grow exponentially by combining it with CRISPR.  By employing CRAGE, … That work by JGI researchers was published April 2022 in Cell Chemical Biology . When it comes to insect killer P. …
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