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JGI@25: Cow Rumen and the Early Days of Metagenomics
… that can’t be cultured by analyzing and then extrapolating data obtained from environmental samples — to identify over … and … that was really the foundation for many of the tools that are available these days and that are widely used … actually tested in the 2011 paper. In 2015, the study’s dataset became material for a hands-on undergraduate …
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Global Diversity of the Brachypodium Species Complex as a Resource for Genome-Wide Association Studies Demonstrated for Agronomic Traits in Response to Climate
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… and analyze the single nuclei and spatial transcriptomics data this work leverages.   These experiments focused on two … hair. At such resolution, this spatial transcriptomics data captured molecular information from both plant cells … in addition to associated plant genes.  All together, these data offer a granular view of both plant and fungal activity …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… annotated algal genome is available on the JGI’s PhycoCosm data portal.) This research not only sheds light on the … new avenues for utilizing these organisms in sustainable practices, such as biofuel production and natural … No. DE-AC02-05CH11231. … P. psychrophila on PhycoCosm … Datasets …
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JGI Early Career Researchers Featured in mSystems Special Issue
… please visit  energy.gov/science/office-science . … IMG/VR data portal …
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Genome Sequence of the Chestnut Blight Fungus Cryphonectria parasitica EP155: A Fundamental Resource for an Archetypical Invasive Plant Pathogen.
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… that can grow year-over-year on marginal soil and with few resources. Despite the low maintenance, it can produce an … switchgrass genome sequence is available on the JGI plant data portal Phytozome. The combination of field data and genetic information has allowed the research team …
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Coral life history and symbiosis: Functional genomic resources for two reef building Caribbean corals, Acropora palmata and Montastraea faveolata
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… find genetic regions of interest.” The combination of field data and genetic information has allowed the research team … technologies have allowed us to build the necessary genome resources to directly test for genes involved in biomass … puzzle with just 50 pieces. The combination of new genetic tools and experimental gardens allow researchers to detect …
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JGI User Executive Committee Expands
… also interested in developing or improving bioinformatics tools that can help with dataset analysis, as well as how they can be shared with and … for providing input and advice on JGI policies and practices that affect users and their access to technical …
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