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New and Improved: Eucalyptus Reference is Now Accessible
… having genomic resources to develop molecular breeding tools has been critical. The new improved genome assembly … the bioeconomy. Summary In the past decade, many breeding tools for eucalyptus have relied on the E. grandis reference … DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of … genomic data on algae into one place, PhycoCosm allows users to easily compile data that answers what genes are … in algae. PhycoCosm joins other online data portals and tools created by JGI researchers, including the Integrated …
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Natural Prodcast Episode 1: The Primer, Part 1
… Genome Institute, or JGI. JGI is a DOE Office of Science User Facility located at Lawrence Berkeley National … so now here at the JGI, I work with all of the sequencing data that the JGI produces to try to find and identify … I kind of see it. DAN: So what we’ve got here is, I just grabbed a photo of a “biochemical pathways” chart. So if you …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new … RNA to understand gene expression, and developed new tools to map that soil RNA to fungal genomes.  The U.S. … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources
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Examining the cause of high inbreeding depression: analysis of whole‐genome sequence data in 28 selfed progeny of Eucalyptus grandis
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Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2T)
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The Power of One, Amplified
… advances in sequencing technologies and bioinformatic tools have helped decode the genomes of tens of thousands of … of microbial genomes directly from environmental sequence data, by piecing each genome together from large mixtures of … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Yasuo Yoshikuni
… and renewable chemicals, developing genome engineering tools for non-model organisms, modulating microbe-microbe …
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Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)
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Sequencing Technologies & Products
… offering of sequencing capabilities and products to our users. This includes scaling the technologies and enabling … The JGI provides users access to cutting-edge cell sorting, DNA …
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Learning to Look
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an algorithm that a computer could … a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to identify a … of phage-bacterial coevolution and are also useful tools in CRISPR-Cas applications, but we are limited in our …
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