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Comparative Genomics and Transcriptomics Analyses Reveal Divergent Plant Biomass-Degrading Strategies in Fungi
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Metabolic characterization of anaerobic fungi provides a path forward for bioprocessing of crude lignocellulose
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JGI Earth Month: Wetlands Work in #TenHundredWords
… both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic … versions appear side-by-side below: Kaze was part of the  2018 cohort of the JGI-UC Merced Genomics Internship …
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JGI@25: From Life at the Extremes to Editing Genomes
… environmental challenges. Congratulations to Jennifer Doudna of the University of California (UC), Berkeley and … has resulted in several papers, including one in 2018 on the discovery of miniature CRISPR-associated … Cell. 2019 Feb 21;73(4):727-737.e3. doi: 10.1016/j.molcel.2018.12.015. Harrington LB et al. Programmed DNA destruction …
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Simon Roux
… efforts in the field of viral ecogenomics. For this role, Dr. Roux can rely on more than 10 years of expertise … microbiome. Nature Communications 12, 3076. Roux et al., 2018. Minimum Information about an Uncultivated Virus Genome … Researcher (Cross-field), 2020 LBNL Early Career LDRD, 2018 Senior Editor: Microbiology Resource Announcements … …
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Game On: High School Students Drive Everglades Metagenomics Study
… her thoughts about the experience below. In the summer of 2018, Jonathan Benskin was preparing to teach a second year … routes had been taken. Sifting through 16 Trillion Bases of DNA Taking into consideration some complicated environmental … from 4 sites with 5 replicates. They extracted the DNA from the soil with Qiagen DNeasy PowerSoil Kits and sent …
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Computationally Classifying Fungal Lifestyles
… genomes of Dothideomycetes, the largest class of fungi, by lifestyles. The machine “learned” to identify data … species.  The Impact The class  Dothideomycetes includes fungi that obtain nutrients from decaying organic matter … enabled in part through  JGI’s  Community Science Program (CSP) , as several approved proposals have contributed toward …
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Understanding Wildfire Recovery, Starting in Soil
Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way for future … in Nature Microbiology , went a step further, using both DNA and messenger RNA (mRNA) sequencing to identify those … Leotiomycetes species and Coniochaeata lignaria , and both DNA and RNA viruses. One trait that stood out in both …
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Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi
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The F-box protein gene exo-1 is a target for reverse engineering enzyme hypersecretion in filamentous fungi
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Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits
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Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists
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