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Analysis of Brachypodium genomes with genome-wide optical maps
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An Integrated Dataset to Understand Ecosystem Interaction
… time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as well as the soil surrounding … wildlife habitats and water-quality regulation. Focusing on the rhizosphere and interactions between the trees, … to conduct a wide variety of analyses that contribute to a sustainable bioeconomy. Summary The 27 samples studied by …
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Enlarging Windows into Understanding Gene Functions
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … halving the total reagent cost. While Biotin DAP-seq can be used by itself, it can also serve as a stepping stone to studying many genomes simultaneously through multiDAP, which allows researchers to conduct …
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Scaling Up Existing Skill Sets
… experience working intermediately between academia and industry, which is something I didn’t even know existed before. … to think outside of simply looking for jobs/postdocs in industry or academia. It was also a great opportunity to study … experience working intermediately between academia and industry, which is something I didn’t even know existed before. …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, 24 large-scale proposals have been accepted … had not been a primary investigator on any proposals previously accepted through JGI’s calls. Nearly 200 Terabases of … expected to be generated for the accepted proposals, said Susannah Tringe, JGI User Programs Deputy. “These new CSP …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… (UC), Berkeley, UC Agriculture and Natural Resources (ANR), US Department of Agriculture P­­lant Gene Expression Center, … Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … the crop and its microbiome. For three consecutive years (2016-2018), researchers conducted large-scale experiments in …
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Mindfully Moving JGI
… from Walnut Creek to the heart of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in … home located in the heart of the Berkeley Lab main campus. On Monday, November 11, a week after they’d been  moved … asked to “KonMari” their spaces, a decluttering method focused on keeping only items that bring joy (and are necessary …
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JGI announces 2025 Functional Genomics awardees
… from left: [Above] Hao Chen, Matthew Cope-Arguello, Theophilus Olufemi Isimikalu, Todd H. Oakley, BJ Philmus and Aaron M. Roshotte; [Below] Paul Scesa, Kathleen … Tapping into these functions allows researchers to use them for engineering applications in support of …
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UC Merced Interns Reflect on Their JGI Summer Projects
… wide — from implementing new data visualization tools, to using natural language processing techniques to categorize … Intern: Brendan Blasius (undergraduate) Mentor: Guohong "Albert" Wu Click the … Intern: Jasper Toscani Field (graduate) Mentor: Brian Bushnell Click the image to watch the video …
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Supercharging SIP in the Fungal Hyphosphere
… have successfully automated aspects of a commonly-used process for studying microbial communities, with … The Impact Stable isotope probing is a long and laborious process — as well as a key way scientists study microorganisms. Because microorganisms live in complex communities, like within …
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A global metagenomic map of urban microbiomes and antimicrobial resistance
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Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat
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