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Nick Everson
… Mr. Everson rejoined the JGI in 2020  and leads all aspects of JGI Operations which include the Safety, Finance, Human … Systems & Engineering Division. Prior to his tenure with Berkeley Lab, he served in the US Navy for 6 years as a … national laboratories, and other organizations with regard to JGI administrative and financial management, …
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in Florida to … The course had a defined set of objectives, and started with an image of a spoonful of dirt with the question: Do … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… of quantity and thickness. Replacing older, thicker ice with younger, thinner ice means more fresh water — and less … environment of comparable salinity.  Researchers collected samples at several points in time to assess nutrient … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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New Research Sheds Light on Diversity in the Deep Sea
… seeps through cracks in the Earth’s crust and reacts with very hot rocks below, becoming an extremely hot, … and the University of Wisconsin-Madison collected 40 samples from five oceanic regions to better understand how … the communities studied. The datasets are available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … a resource that associates plant’s genetic variants with specific adaptation mechanisms they had identified. For … in  Marchantia  and in flowering plant lineages.   With the information about  Marchantia -specific innovations and …
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Comparative Transcriptome Analysis of Methylibium petroleiphilum PM1 Exposed to the Fuel Oxygenates Methyl tert-Butyl Ether and Ethanol▿ †
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… plant fibers. The Science Walk in a temperate forest filled with Norway spruce trees, and microbial activity teems … messenger RNA sequences (transcriptomes) from their soil samples. This gene expression dataset was particularly … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community … CSP  New Investigator call for proposals.  Tips: Contact us with your questions (jgi-jira+pmo[email protected]) Carefully read our proposal call … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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A Sorghum Pangenome Opens More Doors to Discovery
… harness the traits that let this biomass powerhouse thrive. Within its genome, Sorghum bicolor holds keys to drought and … Biotechnology Genome Sequencing Center and a member of the JGI Plant Program. Lovell was a senior author on this work … from a much broader view than ever before. With this information, researchers can link genetic variation more …
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Computationally Classifying Fungal Lifestyles
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … to over 100  Dothideomycetes genomes, just enough of a sample size to test if a computer algorithm could … 25  Dothideomycetes species, and also provides more information about speciation events. …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of … under active development for over 5 years, provides users with the genome browsers, gene pages, search, BLAST and … BioMart data warehouse). We are still working out the best protocols to allow us to update PhytoMine and keep it …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the … Olpidium attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene … times in order to obtain enough zoospores. DNA and RNA samples generated from the zoospores were then sent to the …
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