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Cataloging the Microbes that Manage the Health of River Systems
… of water help regulate. However, the microbes also interact with compounds like fertilizers and microplastics that might … systems, these communities remain understudied. Through the JGI’s Community Science Program, Colorado State University … 3.8 trillion bases or Terabases of sequencing data, along with geochemical and geospatial measurements collected at …
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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with the seasons. The Science Light-harvesting bacteria … bacteria instead go through a boom and bust cycle aligned with light availability. A long-running time-series study … Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… For more than a decade, researchers around the world have collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Tina Clarke
… (JBEI) and in 2017 joined the Joint Genome Institute (JGI). Tina serves in an HR advisory role to Division/Area … human and group behaviors as her role in HR evolved with more exposure in employee relations matters and … a Mediator she is committed to enabling conflict resolution with respect and trust. Ms. Clarke is very enthusiastic to …
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately facilitates microbial genome … language of biology — and primed for integration with artificial intelligence tools.  LLMs aren’t just for … the human language and using it to communicate with machines. It has been applied in a variety of …
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Ian Blaby
… biology and functional genomics. Prior to joining the JGI, he was a group lead at Brookhaven National Laboratory … positions at University of Florida and UCLA he has worked with a wide range of eukaryotic algae, archaea and bacteria with a view to developing a deeper understanding of …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics … switchgrass transformation pipeline and, in collaboration with industrial partners, generated hundreds of transgenic … tolerance, and the mechanisms by which plants interact with their microbiomes. In addition, his group conducts …
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Leo Baumgart
… binding sites and which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and … Player-Jackson et al. "Supporting FAIR Scientific Workflows with the JGI Analysis Workflow Service (JAWS)." In 2025 IEEE …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… With a new methodology, scientists are now getting more … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … studies, these scientists (now at Stanford University) collaborated with the JGI. Working together, they found most …
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MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … a resource that associates plant’s genetic variants with specific adaptation mechanisms they had identified. For … and later plant lineages that independently expanded. Along with NLRs, the diversified peroxidases are associated with …
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