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The Surprising Structure of a Shrub Willow Sex Chromosome
… hermaphrodites, expressing both male and female gametes in one individual. But some, including shrub willow  Salix purpurea , employ the evolutionary strategy we are far more familiar with: … The JGI sequenced the shrub willows through the  Community Science Program , using long-read sequencing to …
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Graduate Students Get Thesis Research Opportunity at the JGI
… the opportunity to pursue part of their thesis research at one of the DOE national laboratories or national user … between 3-12 consecutive months. Their proposed research projects address scientific challenges central to Office of … caliber of scientists.” For her project, “Microbial Community Structure and Methane Production in California’s …
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Training the Next Generation of Talent
… Office of Science user facility, Keedrian Olmstead was back on campus at the University of California, Merced to start … challenges UC Merced graduate students with individual projects at the DOE JGI that provide hands-on experience in cutting-edge genome research and apply experimental and computation tools to solve research problems. In Visel’s …
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Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO, USA.
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its reproductive … a host genome (Rm ATCC 52813) as part of the 1000 Fungal Genomes project. As reported in the November 29, 2017 issue of … This research was supported by the National Science Foundation and the National Institutes of …
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses with … Almost all known virophage genomes share only four genes in common: major and minor capsid proteins (MCP and mCP, …
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Exploring Polymorphisms Created by Transposable Elements
… My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) contributed to in the grass model species Brachypodium …
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Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov.,
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… recognize that crop varieties grow best in certain regions. Most plant species have adapted to their local … fellow in the Juenger lab and continues to work on the project from a lab at Michigan State University that is … test genetic hypotheses in species with large and complex genomes,” said Lovell. “However, new sequencing technologies …
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Taking Stock of the Known and Unknown Microbial Space
… technologies have led to an abundance of microbial genomes becoming available to the global research community.  … of Science User Facility located at Lawrence Berkeley National Laboratory Berkeley Lab), have taken stock of the … of Science User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a methylthio-alkane reductase system, researchers … how such inter-Facility collaborations through the Genomes to Structure and Function focus area of the JGI’s … way from sequencing to functional characterization, and a project like this — an exciting project — we were able to …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics as … . Susan Wessler , UC Riverside Shaping up conservative genomes Keynote Talk Title: Transposable Element-Mediated … to know at the beginning of my career, with my postdoctoral project beginning with her strains,” Wessler explained. “She …
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