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Understanding Wildfire Recovery, Starting in Soil
A metagenomic look at the soil microbes present a year after … a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way for future plants and trees …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … conditions and a specific microbial host to replicate. Sequencing genetic material directly from samples sidesteps … began to offer a window into viral existence. Along with highlighting the viruses in a given sample, …
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JGI@25: Studying Sorghum’s Survival Skills
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … biofuels thanks to its drought and flood hardiness. Even with little water, full sunlight and hot temperatures, … but other important crops as well. In 2009, the JGI sequenced and analyzed the first reference genome for …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth Day … at the University of Hawai’i at Mānoa. I recently caught up with Karolina at the Plant and Animal Genomes, or PAG …
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Eelgrass Proves to Be Much Younger Than We Thought
Recent study shows eelgrass has been around about 2.5 million years less than … that figure is likely closer to a mere 250,000 years — with many key colonization events in the Atlantic ocean …
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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity … of Science User Facility located at Lawrence Berkeley National Laboratory Berkeley Lab), have taken stock of the … Dongying Wu, a member of the Functional Annotation team within the JGI’s Microbiome Data Science group. “Turns out …
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The Power of One, Amplified
A preview of how large-scale single cell genomics … metagenomics studies. The Science Researchers demonstrated the value of conducting large-scale single cell … cells harbored mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that …
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The More the Merrier: Making the Case for Plant Pan-genomes
Brachypodium model system traces polyploid genome evolution. … plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
A special issue of Synthetic Biology celebrates research … enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes … case studies, JGI scientific users share how they’ve worked with the JGI DNA Synthesis Science Program, which started in …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and function. If a … — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species decompose …
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