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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an … had found other ways to produce energy, using a process called fermentation. To better understand the range of … (KBase). They also built an interactive browser that allows other researchers to study the genomes and predict …
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JGI Mural
The JGI mural on the 3rd floor of the Integrative Genomics Building whimsically references dozens of iconic JGI contributions to …
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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing … Research Division.. As a postdoc, her research focused on stable and accurate computational methods for … Officer provides advice and strategic direction for the overall design and implementation of computational biology and …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
New 5-year strategic plan outlines how the JGI will advance the bioeconomy, leveraging … has released its newest 5-Year Strategic Plan: Innovating Genomics to Serve the Changing Planet (download a copy at … modeling, novel bioproducts, and environmental remediation—all priorities identified by the DOE Office of Biological …
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Better Genome Editing for Bioenergy
… part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a … RNA to lead it to the correct sequence to snip — but not all guides are effective. To ensure the gene editing tool … the target gene intact: a false negative if the gene is actually essential. Through the JGI’s  Community Science Program …
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Effects of Polar Light Cycle on Microbial Food Web
… change with the seasons. The Science Light-harvesting bacteria (phototrophs) in Antarctica’s Ace Lake defy the … takes place only on a microbial level. Previous studies focused on the Southern Ocean have found that in winter … water below. Cavicchioli and his team took samples from all three sections of the stratified water and determined …
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Tanja Woyke
After studying the mechanism of action of antifungal natural products … deciphered function and host-symbiont interplay using metagenomics. Taking on a Research Scientist position in 2007, … Programs provides direction, leadership and oversight for all of the JGI user programs, including the Community …
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Identification of candidate genes in Arabidopsis and Populus cell wall biosynthesis using text-mining, co-expression network analysis and comparative genomics
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The JGI Data Portal: Improving User Experience
… human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI … Portal is a critical resource — it provides access to all of JGI’s genomic databases and tools,” noted  Kjiersten Fagnan , …
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JGI Earth Month: Wetlands Work in #TenHundredWords
Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to living on a changing planet. Mo Kaze is a …
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Krishna Palaniappan
Krishna is responsible for the design and maintenance of the Integrated Microbial Genomes (IMG) data warehouse, and integration of genomic and metagenomic data with transcriptomics and …
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Jinghua Jenny Huang
Jenny is working on the display and visualization of large amount isolate genomic and metagenomic data stored in Oracle databases, Berkeley DB and files in various …
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